Structural coalescence underlies the aggregation propensity of a β-barrel protein motif
A clear understanding of the structural foundations underlying protein aggregation is an elusive goal of central biomedical importance. A step toward this aim is exemplified by the β- barrel motif represented by the intestinal fatty acid binding protein (IFABP) and two abridged all-β sheet forms (δ9...
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| Acceso en línea: | http://hdl.handle.net/20.500.12110/paper_19326203_v12_n2_p_Angelani |
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todo:paper_19326203_v12_n2_p_Angelani2023-10-03T16:34:47Z Structural coalescence underlies the aggregation propensity of a β-barrel protein motif Angelani, C.R. Caramelo, J.J. Curto, L.M. Delfino, J.M. fatty acid binding protein trifluoroethanol urea fatty acid binding protein protein aggregate aqueous solution Article beta sheet carboxy terminal sequence circular dichroism correlational study protein aggregation protein conformation protein motif protein secondary structure protein stability protein unfolding structure analysis animal chemistry metabolism protein motif rat Amino Acid Motifs Animals Fatty Acid-Binding Proteins Protein Aggregates Protein Stability Rats Trifluoroethanol A clear understanding of the structural foundations underlying protein aggregation is an elusive goal of central biomedical importance. A step toward this aim is exemplified by the β- barrel motif represented by the intestinal fatty acid binding protein (IFABP) and two abridged all-β sheet forms (δ98δ and δ78δ). At odds with the established notion that a perturbation of the native fold should necessarily favor a buildup of intermediate forms with an enhanced tendency to aggregate, the intrinsic stability (δG°H2O) of these proteins does not bear a straightforward correlation with their trifluoroethanol (TFE)-induced aggregation propensity. In view of this fact, we found it more insightful to delve into the connection between structure and stability under sub-aggregating conditions (10% TFE). In the absence of the co-solvent, the abridged variants display a common native-like region decorated with a disordered Cterminal stretch. Upon TFE addition, an increase in secondary structure content is observed, assimilating them to the parent protein. In this sense, TFE perturbs a common native like region while exerting a global compaction effect. Importantly, in all cases, fatty acid binding function is preserved. Interestingly, energetic as well as structural diversity in aqueous solution evolves into a common conformational ensemble more akin in stability. These facts reconcile apparent paradoxical findings related to stability and rates of aggregation. This scenario likely mimics the accrual of aggregation-prone species in the population, an early critical event for the development of fibrillation. © 2017 Angelani et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. JOUR info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by/2.5/ar http://hdl.handle.net/20.500.12110/paper_19326203_v12_n2_p_Angelani |
| institution |
Universidad de Buenos Aires |
| institution_str |
I-28 |
| repository_str |
R-134 |
| collection |
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
| topic |
fatty acid binding protein trifluoroethanol urea fatty acid binding protein protein aggregate aqueous solution Article beta sheet carboxy terminal sequence circular dichroism correlational study protein aggregation protein conformation protein motif protein secondary structure protein stability protein unfolding structure analysis animal chemistry metabolism protein motif rat Amino Acid Motifs Animals Fatty Acid-Binding Proteins Protein Aggregates Protein Stability Rats Trifluoroethanol |
| spellingShingle |
fatty acid binding protein trifluoroethanol urea fatty acid binding protein protein aggregate aqueous solution Article beta sheet carboxy terminal sequence circular dichroism correlational study protein aggregation protein conformation protein motif protein secondary structure protein stability protein unfolding structure analysis animal chemistry metabolism protein motif rat Amino Acid Motifs Animals Fatty Acid-Binding Proteins Protein Aggregates Protein Stability Rats Trifluoroethanol Angelani, C.R. Caramelo, J.J. Curto, L.M. Delfino, J.M. Structural coalescence underlies the aggregation propensity of a β-barrel protein motif |
| topic_facet |
fatty acid binding protein trifluoroethanol urea fatty acid binding protein protein aggregate aqueous solution Article beta sheet carboxy terminal sequence circular dichroism correlational study protein aggregation protein conformation protein motif protein secondary structure protein stability protein unfolding structure analysis animal chemistry metabolism protein motif rat Amino Acid Motifs Animals Fatty Acid-Binding Proteins Protein Aggregates Protein Stability Rats Trifluoroethanol |
| description |
A clear understanding of the structural foundations underlying protein aggregation is an elusive goal of central biomedical importance. A step toward this aim is exemplified by the β- barrel motif represented by the intestinal fatty acid binding protein (IFABP) and two abridged all-β sheet forms (δ98δ and δ78δ). At odds with the established notion that a perturbation of the native fold should necessarily favor a buildup of intermediate forms with an enhanced tendency to aggregate, the intrinsic stability (δG°H2O) of these proteins does not bear a straightforward correlation with their trifluoroethanol (TFE)-induced aggregation propensity. In view of this fact, we found it more insightful to delve into the connection between structure and stability under sub-aggregating conditions (10% TFE). In the absence of the co-solvent, the abridged variants display a common native-like region decorated with a disordered Cterminal stretch. Upon TFE addition, an increase in secondary structure content is observed, assimilating them to the parent protein. In this sense, TFE perturbs a common native like region while exerting a global compaction effect. Importantly, in all cases, fatty acid binding function is preserved. Interestingly, energetic as well as structural diversity in aqueous solution evolves into a common conformational ensemble more akin in stability. These facts reconcile apparent paradoxical findings related to stability and rates of aggregation. This scenario likely mimics the accrual of aggregation-prone species in the population, an early critical event for the development of fibrillation. © 2017 Angelani et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
| format |
JOUR |
| author |
Angelani, C.R. Caramelo, J.J. Curto, L.M. Delfino, J.M. |
| author_facet |
Angelani, C.R. Caramelo, J.J. Curto, L.M. Delfino, J.M. |
| author_sort |
Angelani, C.R. |
| title |
Structural coalescence underlies the aggregation propensity of a β-barrel protein motif |
| title_short |
Structural coalescence underlies the aggregation propensity of a β-barrel protein motif |
| title_full |
Structural coalescence underlies the aggregation propensity of a β-barrel protein motif |
| title_fullStr |
Structural coalescence underlies the aggregation propensity of a β-barrel protein motif |
| title_full_unstemmed |
Structural coalescence underlies the aggregation propensity of a β-barrel protein motif |
| title_sort |
structural coalescence underlies the aggregation propensity of a β-barrel protein motif |
| url |
http://hdl.handle.net/20.500.12110/paper_19326203_v12_n2_p_Angelani |
| work_keys_str_mv |
AT angelanicr structuralcoalescenceunderliestheaggregationpropensityofabbarrelproteinmotif AT caramelojj structuralcoalescenceunderliestheaggregationpropensityofabbarrelproteinmotif AT curtolm structuralcoalescenceunderliestheaggregationpropensityofabbarrelproteinmotif AT delfinojm structuralcoalescenceunderliestheaggregationpropensityofabbarrelproteinmotif |
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1807323076698832896 |