INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction

INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional...

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Detalles Bibliográficos
Autores principales: Parra, R.G., Rohr, C.O., Koile, D., Perez-Castro, C., Yankilevich, P.
Formato: JOUR
Materias:
transcription factor
algorithm
binding site
computer simulation
genome
Internet
regulatory sequence
Algorithms
Binding Sites
Computer Simulation
Genome
Regulatory Elements, Transcriptional
Transcription Factors
Acceso en línea:http://hdl.handle.net/20.500.12110/paper_13674803_v32_n8_p1229_Parra
Aporte de:
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) de Universidad de Buenos Aires
Descripción
Sumario:INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional links to third-party functional tools that complement user capabilities, CRM analysis and hypothesis construction. Improvements in the core implementation have led to a faster and more efficient tool. In addition, this new release introduces a new interface designed for a more integrative and dynamic user experience. © 2015 The Author. All rights reserved.

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