INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction

INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional...

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Detalles Bibliográficos
Autores principales: Parra, R.G., Rohr, C.O., Koile, D., Perez-Castro, C., Yankilevich, P.
Formato: JOUR
Materias:
transcription factor
algorithm
binding site
computer simulation
genome
Internet
regulatory sequence
Algorithms
Binding Sites
Computer Simulation
Genome
Regulatory Elements, Transcriptional
Transcription Factors
Acceso en línea:http://hdl.handle.net/20.500.12110/paper_13674803_v32_n8_p1229_Parra
Aporte de:
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) de Universidad de Buenos Aires
id todo:paper_13674803_v32_n8_p1229_Parra
record_format dspace
spelling todo:paper_13674803_v32_n8_p1229_Parra2023-10-03T16:11:33Z INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction Parra, R.G. Rohr, C.O. Koile, D. Perez-Castro, C. Yankilevich, P. transcription factor algorithm binding site computer simulation genome Internet regulatory sequence Algorithms Binding Sites Computer Simulation Genome Internet Regulatory Elements, Transcriptional Transcription Factors INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional links to third-party functional tools that complement user capabilities, CRM analysis and hypothesis construction. Improvements in the core implementation have led to a faster and more efficient tool. In addition, this new release introduces a new interface designed for a more integrative and dynamic user experience. © 2015 The Author. All rights reserved. JOUR info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by/2.5/ar http://hdl.handle.net/20.500.12110/paper_13674803_v32_n8_p1229_Parra
institution Universidad de Buenos Aires
institution_str I-28
repository_str R-134
collection Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA)
topic transcription factor
algorithm
binding site
computer simulation
genome
Internet
regulatory sequence
Algorithms
Binding Sites
Computer Simulation
Genome
Internet
Regulatory Elements, Transcriptional
Transcription Factors
spellingShingle transcription factor
algorithm
binding site
computer simulation
genome
Internet
regulatory sequence
Algorithms
Binding Sites
Computer Simulation
Genome
Internet
Regulatory Elements, Transcriptional
Transcription Factors
Parra, R.G.
Rohr, C.O.
Koile, D.
Perez-Castro, C.
Yankilevich, P.
INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction
topic_facet transcription factor
algorithm
binding site
computer simulation
genome
Internet
regulatory sequence
Algorithms
Binding Sites
Computer Simulation
Genome
Internet
Regulatory Elements, Transcriptional
Transcription Factors
description INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional links to third-party functional tools that complement user capabilities, CRM analysis and hypothesis construction. Improvements in the core implementation have led to a faster and more efficient tool. In addition, this new release introduces a new interface designed for a more integrative and dynamic user experience. © 2015 The Author. All rights reserved.
format JOUR
author Parra, R.G.
Rohr, C.O.
Koile, D.
Perez-Castro, C.
Yankilevich, P.
author_facet Parra, R.G.
Rohr, C.O.
Koile, D.
Perez-Castro, C.
Yankilevich, P.
author_sort Parra, R.G.
title INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction
title_short INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction
title_full INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction
title_fullStr INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction
title_full_unstemmed INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction
title_sort insect 2.0: a web-server for genome-wide cis-regulatory modules prediction
url http://hdl.handle.net/20.500.12110/paper_13674803_v32_n8_p1229_Parra
work_keys_str_mv AT parrarg insect20awebserverforgenomewidecisregulatorymodulesprediction
AT rohrco insect20awebserverforgenomewidecisregulatorymodulesprediction
AT koiled insect20awebserverforgenomewidecisregulatorymodulesprediction
AT perezcastroc insect20awebserverforgenomewidecisregulatorymodulesprediction
AT yankilevichp insect20awebserverforgenomewidecisregulatorymodulesprediction
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