Segmentation of cells from 3-D confocal images of live zebrafish embryo
In this paper, we use partial-differential-equationbased segmentation to accurately extract the shapes of membranes and nuclei from time lapse confocal microscopy images, taken throughout early Zebrafish embryogenesis. This strategy is a prerequisite for an accurate quantitative analysis of cell sha...
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2007
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| Acceso en línea: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_05891019_v_n_p6027_Zanella http://hdl.handle.net/20.500.12110/paper_05891019_v_n_p6027_Zanella |
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paper:paper_05891019_v_n_p6027_Zanella2023-06-08T15:42:48Z Segmentation of cells from 3-D confocal images of live zebrafish embryo Melani, Camilo Cell membranes Image reconstruction Partial differential equations Three dimensional 3D confocal images Live zebrafish embryo Time lapse confocal microscopy images Zebrafish embryogenesis Image segmentation In this paper, we use partial-differential-equationbased segmentation to accurately extract the shapes of membranes and nuclei from time lapse confocal microscopy images, taken throughout early Zebrafish embryogenesis. This strategy is a prerequisite for an accurate quantitative analysis of cell shape and morphodynamics during organogenesis and is the basis for an integrated understanding of biological processes. This data will also serve for the measurement of the variability between individuals in a population. The segmentation of cellular structures is achieved by first using an edge-preserving image filtering method for noise reduction and then applying an algorithm for cell shape reconstruction based on the Subjective Surfaces technique. © 2007 IEEE. Fil:Melani, C. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. 2007 https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_05891019_v_n_p6027_Zanella http://hdl.handle.net/20.500.12110/paper_05891019_v_n_p6027_Zanella |
| institution |
Universidad de Buenos Aires |
| institution_str |
I-28 |
| repository_str |
R-134 |
| collection |
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
| topic |
Cell membranes Image reconstruction Partial differential equations Three dimensional 3D confocal images Live zebrafish embryo Time lapse confocal microscopy images Zebrafish embryogenesis Image segmentation |
| spellingShingle |
Cell membranes Image reconstruction Partial differential equations Three dimensional 3D confocal images Live zebrafish embryo Time lapse confocal microscopy images Zebrafish embryogenesis Image segmentation Melani, Camilo Segmentation of cells from 3-D confocal images of live zebrafish embryo |
| topic_facet |
Cell membranes Image reconstruction Partial differential equations Three dimensional 3D confocal images Live zebrafish embryo Time lapse confocal microscopy images Zebrafish embryogenesis Image segmentation |
| description |
In this paper, we use partial-differential-equationbased segmentation to accurately extract the shapes of membranes and nuclei from time lapse confocal microscopy images, taken throughout early Zebrafish embryogenesis. This strategy is a prerequisite for an accurate quantitative analysis of cell shape and morphodynamics during organogenesis and is the basis for an integrated understanding of biological processes. This data will also serve for the measurement of the variability between individuals in a population. The segmentation of cellular structures is achieved by first using an edge-preserving image filtering method for noise reduction and then applying an algorithm for cell shape reconstruction based on the Subjective Surfaces technique. © 2007 IEEE. |
| author |
Melani, Camilo |
| author_facet |
Melani, Camilo |
| author_sort |
Melani, Camilo |
| title |
Segmentation of cells from 3-D confocal images of live zebrafish embryo |
| title_short |
Segmentation of cells from 3-D confocal images of live zebrafish embryo |
| title_full |
Segmentation of cells from 3-D confocal images of live zebrafish embryo |
| title_fullStr |
Segmentation of cells from 3-D confocal images of live zebrafish embryo |
| title_full_unstemmed |
Segmentation of cells from 3-D confocal images of live zebrafish embryo |
| title_sort |
segmentation of cells from 3-d confocal images of live zebrafish embryo |
| publishDate |
2007 |
| url |
https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_05891019_v_n_p6027_Zanella http://hdl.handle.net/20.500.12110/paper_05891019_v_n_p6027_Zanella |
| work_keys_str_mv |
AT melanicamilo segmentationofcellsfrom3dconfocalimagesoflivezebrafishembryo |
| _version_ |
1768544089715769344 |