RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides
In silico analyses have revealed a conserved protein domain (CHDL) widely present in bacteria that has significant structural similarity to eukaryotic cadherins. A CHDL domain was shown to be present in RapA, a protein that is involved in autoaggregation of Rhizobium cells, biofilm formation, and ad...
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2013
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| Acceso en línea: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00219258_v288_n4_p2893_Abdian http://hdl.handle.net/20.500.12110/paper_00219258_v288_n4_p2893_Abdian |
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paper:paper_00219258_v288_n4_p2893_Abdian2023-06-08T14:43:35Z RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides Abdian, Patricia Zorreguieta, Angeles Archaea Archaeal Biofilm formation Biofilm matrix Cadherins Calcium binding Calcium ions Carbohydrate binding Cellular interaction Conserved proteins Exopolysaccharides Homo-oligomers In-silico Isothermal titration calorimetry Plant roots Protein molecules Rhizobium leguminosarum Structural similarity Bacteria Biofilms Calcium Circular dichroism spectroscopy Glycoproteins Light scattering Metabolites Oligomerization Oligomers Polysaccharides Proteins cadherin calcium binding protein calcium ion exopolysaccharide oligomer protein RapA2 unclassified drug article beta sheet circular dichroism controlled study isothermal titration calorimetry light scattering nonhuman priority journal protein conformation protein determination protein domain protein folding protein function protein protein interaction protein stability Rhizobium leguminosarum Amino Acid Sequence Bacterial Proteins Cadherins Calcium Calcium-Binding Proteins Calorimetry Lectins Molecular Sequence Data Polysaccharides Protein Binding Protein Structure, Secondary Protein Structure, Tertiary Receptors, Cell Surface Recombinant Proteins Rhizobium leguminosarum Sequence Homology, Amino Acid Solvents In silico analyses have revealed a conserved protein domain (CHDL) widely present in bacteria that has significant structural similarity to eukaryotic cadherins. A CHDL domain was shown to be present in RapA, a protein that is involved in autoaggregation of Rhizobium cells, biofilm formation, and adhesion to plant roots as shown by us and others. Structural similarity to cadherins suggested calcium-dependent oligomerization of CHDL domains as a mechanistic basis for RapA action. Here we show by circular dichroism spectroscopy, light scattering, isothermal titration calorimetry, and other methods that RapA2 from Rhizobium leguminosarum indeed exhibits a cadherin-like β-sheet conformation and that its proper folding and stability are dependent on the binding of one calcium ion per protein molecule. By further in silico analysis we also reveal that RapA2 consists of two CHDL domains and expand the range of CHDLcontaining proteins in bacteria and archaea. However, light scattering assays at various concentrations of added calcium revealed that RapA2 formed neither homo-oligomers nor hetero-oligomers with RapB (a distinct CHDL protein), indicating that RapA2 does not mediate cellular interactions through a cadherin-like mechanism. Instead, we demonstrate that RapA2 interacts specifically with the acidic exopolysaccharides (EPSs) produced by R. leguminosarum in a calcium-dependent manner, sustaining a role of these proteins in the development of the biofilm matrix made of EPS. Because EPS binding by RapA2 can only be attributed to its two CHDL domains, we propose that RapA2 is a calcium-dependent lectin and thatCHDLdomains in various bacterial and archaeal proteins confer carbohydrate binding activity to these proteins. © 2013 by The American Society for Biochemistry and Molecular Biology, Inc. Fil:Abdian, P.L. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Zorreguieta, A. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. 2013 https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00219258_v288_n4_p2893_Abdian http://hdl.handle.net/20.500.12110/paper_00219258_v288_n4_p2893_Abdian |
| institution |
Universidad de Buenos Aires |
| institution_str |
I-28 |
| repository_str |
R-134 |
| collection |
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
| topic |
Archaea Archaeal Biofilm formation Biofilm matrix Cadherins Calcium binding Calcium ions Carbohydrate binding Cellular interaction Conserved proteins Exopolysaccharides Homo-oligomers In-silico Isothermal titration calorimetry Plant roots Protein molecules Rhizobium leguminosarum Structural similarity Bacteria Biofilms Calcium Circular dichroism spectroscopy Glycoproteins Light scattering Metabolites Oligomerization Oligomers Polysaccharides Proteins cadherin calcium binding protein calcium ion exopolysaccharide oligomer protein RapA2 unclassified drug article beta sheet circular dichroism controlled study isothermal titration calorimetry light scattering nonhuman priority journal protein conformation protein determination protein domain protein folding protein function protein protein interaction protein stability Rhizobium leguminosarum Amino Acid Sequence Bacterial Proteins Cadherins Calcium Calcium-Binding Proteins Calorimetry Lectins Molecular Sequence Data Polysaccharides Protein Binding Protein Structure, Secondary Protein Structure, Tertiary Receptors, Cell Surface Recombinant Proteins Rhizobium leguminosarum Sequence Homology, Amino Acid Solvents |
| spellingShingle |
Archaea Archaeal Biofilm formation Biofilm matrix Cadherins Calcium binding Calcium ions Carbohydrate binding Cellular interaction Conserved proteins Exopolysaccharides Homo-oligomers In-silico Isothermal titration calorimetry Plant roots Protein molecules Rhizobium leguminosarum Structural similarity Bacteria Biofilms Calcium Circular dichroism spectroscopy Glycoproteins Light scattering Metabolites Oligomerization Oligomers Polysaccharides Proteins cadherin calcium binding protein calcium ion exopolysaccharide oligomer protein RapA2 unclassified drug article beta sheet circular dichroism controlled study isothermal titration calorimetry light scattering nonhuman priority journal protein conformation protein determination protein domain protein folding protein function protein protein interaction protein stability Rhizobium leguminosarum Amino Acid Sequence Bacterial Proteins Cadherins Calcium Calcium-Binding Proteins Calorimetry Lectins Molecular Sequence Data Polysaccharides Protein Binding Protein Structure, Secondary Protein Structure, Tertiary Receptors, Cell Surface Recombinant Proteins Rhizobium leguminosarum Sequence Homology, Amino Acid Solvents Abdian, Patricia Zorreguieta, Angeles RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides |
| topic_facet |
Archaea Archaeal Biofilm formation Biofilm matrix Cadherins Calcium binding Calcium ions Carbohydrate binding Cellular interaction Conserved proteins Exopolysaccharides Homo-oligomers In-silico Isothermal titration calorimetry Plant roots Protein molecules Rhizobium leguminosarum Structural similarity Bacteria Biofilms Calcium Circular dichroism spectroscopy Glycoproteins Light scattering Metabolites Oligomerization Oligomers Polysaccharides Proteins cadherin calcium binding protein calcium ion exopolysaccharide oligomer protein RapA2 unclassified drug article beta sheet circular dichroism controlled study isothermal titration calorimetry light scattering nonhuman priority journal protein conformation protein determination protein domain protein folding protein function protein protein interaction protein stability Rhizobium leguminosarum Amino Acid Sequence Bacterial Proteins Cadherins Calcium Calcium-Binding Proteins Calorimetry Lectins Molecular Sequence Data Polysaccharides Protein Binding Protein Structure, Secondary Protein Structure, Tertiary Receptors, Cell Surface Recombinant Proteins Rhizobium leguminosarum Sequence Homology, Amino Acid Solvents |
| description |
In silico analyses have revealed a conserved protein domain (CHDL) widely present in bacteria that has significant structural similarity to eukaryotic cadherins. A CHDL domain was shown to be present in RapA, a protein that is involved in autoaggregation of Rhizobium cells, biofilm formation, and adhesion to plant roots as shown by us and others. Structural similarity to cadherins suggested calcium-dependent oligomerization of CHDL domains as a mechanistic basis for RapA action. Here we show by circular dichroism spectroscopy, light scattering, isothermal titration calorimetry, and other methods that RapA2 from Rhizobium leguminosarum indeed exhibits a cadherin-like β-sheet conformation and that its proper folding and stability are dependent on the binding of one calcium ion per protein molecule. By further in silico analysis we also reveal that RapA2 consists of two CHDL domains and expand the range of CHDLcontaining proteins in bacteria and archaea. However, light scattering assays at various concentrations of added calcium revealed that RapA2 formed neither homo-oligomers nor hetero-oligomers with RapB (a distinct CHDL protein), indicating that RapA2 does not mediate cellular interactions through a cadherin-like mechanism. Instead, we demonstrate that RapA2 interacts specifically with the acidic exopolysaccharides (EPSs) produced by R. leguminosarum in a calcium-dependent manner, sustaining a role of these proteins in the development of the biofilm matrix made of EPS. Because EPS binding by RapA2 can only be attributed to its two CHDL domains, we propose that RapA2 is a calcium-dependent lectin and thatCHDLdomains in various bacterial and archaeal proteins confer carbohydrate binding activity to these proteins. © 2013 by The American Society for Biochemistry and Molecular Biology, Inc. |
| author |
Abdian, Patricia Zorreguieta, Angeles |
| author_facet |
Abdian, Patricia Zorreguieta, Angeles |
| author_sort |
Abdian, Patricia |
| title |
RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides |
| title_short |
RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides |
| title_full |
RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides |
| title_fullStr |
RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides |
| title_full_unstemmed |
RapA2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides |
| title_sort |
rapa2 is a calcium-binding lectin composed of two highly conserved cadherin-like domains that specifically recognize rhizobium leguminosarum acidic exopolysaccharides |
| publishDate |
2013 |
| url |
https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00219258_v288_n4_p2893_Abdian http://hdl.handle.net/20.500.12110/paper_00219258_v288_n4_p2893_Abdian |
| work_keys_str_mv |
AT abdianpatricia rapa2isacalciumbindinglectincomposedoftwohighlyconservedcadherinlikedomainsthatspecificallyrecognizerhizobiumleguminosarumacidicexopolysaccharides AT zorreguietaangeles rapa2isacalciumbindinglectincomposedoftwohighlyconservedcadherinlikedomainsthatspecificallyrecognizerhizobiumleguminosarumacidicexopolysaccharides |
| _version_ |
1768544986905706496 |