Generation of Sequence-specific, High Affinity Anti-DNA Antibodies
By taking advantage of the extreme stability of a protein-DNA complex, we have obtained two highly specific monoclonal antibodies against a predetermined palindromic DNA sequence corresponding to the binding site of the E2 transcriptional regulator of the human papillomavirus (HPV-16). The purified...
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paper:paper_00219258_v276_n16_p12769_Cerutti2023-06-08T14:43:19Z Generation of Sequence-specific, High Affinity Anti-DNA Antibodies Cerutti, María Laura de Prat Gay, Gonzalo Antigens Chemical bonds Complexation Dissociation DNA DNA sequences Spectroscopy Dissociation constants Antibodies DNA DNA antibody oligonucleotide transcription factor E2 unclassified drug DNA DNA binding protein E2 protein, Bovine papillomavirus E2 protein, Human papillomavirus type 16 monoclonal antibody oncoprotein virus protein antibody specificity antigen binding antigen recognition article binding affinity binding assay binding site carboxy terminal sequence complex formation dissociation constant DNA binding DNA sequence immunogenicity priority journal protein DNA binding protein DNA interaction spectroscopy transcription regulation amino acid sequence animal antibody combining site cattle chemistry enzyme linked immunosorbent assay human immunoglobulin variable region immunology metabolism molecular genetics mouse Papilloma virus sequence alignment sequence homology Bovinae Human papillomavirus Human papillomavirus type 16 Papillomavirus Amino Acid Sequence Animals Antibodies, Monoclonal Binding Sites Binding Sites, Antibody Cattle DNA DNA-Binding Proteins Enzyme-Linked Immunosorbent Assay Humans Immunoglobulin Variable Region Mice Molecular Sequence Data Oncogene Proteins, Viral Papillomaviridae Sequence Alignment Sequence Homology, Amino Acid Viral Proteins By taking advantage of the extreme stability of a protein-DNA complex, we have obtained two highly specific monoclonal antibodies against a predetermined palindromic DNA sequence corresponding to the binding site of the E2 transcriptional regulator of the human papillomavirus (HPV-16). The purified univalent antibody fragments bind to a double-stranded DNA oligonucleotide corresponding to the E2 binding site in solution with dissociation constants in the low and subnanomolar range. This affinity matches that of the natural DNA binding domain and is severalfold higher than the affinity of a homologous bovine E2 C-terminal domain (BPV-1) for the same DNA. These antibodies discriminate effectively among a number of double- and single-stranded synthetic DNAs with factors ranging from 125-to 20,000-fold the dissociation constant of the specific DNA sequence used in the immunogenic protein-DNA complex. Moreover, they are capable of fine specificity tuning, since they both bind less tightly to another HPV-16 E2 binding site, differing in only 1 base pair in a noncontact flexible region. Beyond the relevance of obtaining a specific anti-DNA response, these results provide a first glance at how DNA as an antigen is recognized specifically by an antibody. The accuracy of the spectroscopic method used for the binding analysis suggests that a detailed mechanistic analysis is attainable. Fil:Cerutti, M.L. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:De Prat-Gay, G. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. 2001 https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00219258_v276_n16_p12769_Cerutti http://hdl.handle.net/20.500.12110/paper_00219258_v276_n16_p12769_Cerutti |
institution |
Universidad de Buenos Aires |
institution_str |
I-28 |
repository_str |
R-134 |
collection |
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
topic |
Antigens Chemical bonds Complexation Dissociation DNA DNA sequences Spectroscopy Dissociation constants Antibodies DNA DNA antibody oligonucleotide transcription factor E2 unclassified drug DNA DNA binding protein E2 protein, Bovine papillomavirus E2 protein, Human papillomavirus type 16 monoclonal antibody oncoprotein virus protein antibody specificity antigen binding antigen recognition article binding affinity binding assay binding site carboxy terminal sequence complex formation dissociation constant DNA binding DNA sequence immunogenicity priority journal protein DNA binding protein DNA interaction spectroscopy transcription regulation amino acid sequence animal antibody combining site cattle chemistry enzyme linked immunosorbent assay human immunoglobulin variable region immunology metabolism molecular genetics mouse Papilloma virus sequence alignment sequence homology Bovinae Human papillomavirus Human papillomavirus type 16 Papillomavirus Amino Acid Sequence Animals Antibodies, Monoclonal Binding Sites Binding Sites, Antibody Cattle DNA DNA-Binding Proteins Enzyme-Linked Immunosorbent Assay Humans Immunoglobulin Variable Region Mice Molecular Sequence Data Oncogene Proteins, Viral Papillomaviridae Sequence Alignment Sequence Homology, Amino Acid Viral Proteins |
spellingShingle |
Antigens Chemical bonds Complexation Dissociation DNA DNA sequences Spectroscopy Dissociation constants Antibodies DNA DNA antibody oligonucleotide transcription factor E2 unclassified drug DNA DNA binding protein E2 protein, Bovine papillomavirus E2 protein, Human papillomavirus type 16 monoclonal antibody oncoprotein virus protein antibody specificity antigen binding antigen recognition article binding affinity binding assay binding site carboxy terminal sequence complex formation dissociation constant DNA binding DNA sequence immunogenicity priority journal protein DNA binding protein DNA interaction spectroscopy transcription regulation amino acid sequence animal antibody combining site cattle chemistry enzyme linked immunosorbent assay human immunoglobulin variable region immunology metabolism molecular genetics mouse Papilloma virus sequence alignment sequence homology Bovinae Human papillomavirus Human papillomavirus type 16 Papillomavirus Amino Acid Sequence Animals Antibodies, Monoclonal Binding Sites Binding Sites, Antibody Cattle DNA DNA-Binding Proteins Enzyme-Linked Immunosorbent Assay Humans Immunoglobulin Variable Region Mice Molecular Sequence Data Oncogene Proteins, Viral Papillomaviridae Sequence Alignment Sequence Homology, Amino Acid Viral Proteins Cerutti, María Laura de Prat Gay, Gonzalo Generation of Sequence-specific, High Affinity Anti-DNA Antibodies |
topic_facet |
Antigens Chemical bonds Complexation Dissociation DNA DNA sequences Spectroscopy Dissociation constants Antibodies DNA DNA antibody oligonucleotide transcription factor E2 unclassified drug DNA DNA binding protein E2 protein, Bovine papillomavirus E2 protein, Human papillomavirus type 16 monoclonal antibody oncoprotein virus protein antibody specificity antigen binding antigen recognition article binding affinity binding assay binding site carboxy terminal sequence complex formation dissociation constant DNA binding DNA sequence immunogenicity priority journal protein DNA binding protein DNA interaction spectroscopy transcription regulation amino acid sequence animal antibody combining site cattle chemistry enzyme linked immunosorbent assay human immunoglobulin variable region immunology metabolism molecular genetics mouse Papilloma virus sequence alignment sequence homology Bovinae Human papillomavirus Human papillomavirus type 16 Papillomavirus Amino Acid Sequence Animals Antibodies, Monoclonal Binding Sites Binding Sites, Antibody Cattle DNA DNA-Binding Proteins Enzyme-Linked Immunosorbent Assay Humans Immunoglobulin Variable Region Mice Molecular Sequence Data Oncogene Proteins, Viral Papillomaviridae Sequence Alignment Sequence Homology, Amino Acid Viral Proteins |
description |
By taking advantage of the extreme stability of a protein-DNA complex, we have obtained two highly specific monoclonal antibodies against a predetermined palindromic DNA sequence corresponding to the binding site of the E2 transcriptional regulator of the human papillomavirus (HPV-16). The purified univalent antibody fragments bind to a double-stranded DNA oligonucleotide corresponding to the E2 binding site in solution with dissociation constants in the low and subnanomolar range. This affinity matches that of the natural DNA binding domain and is severalfold higher than the affinity of a homologous bovine E2 C-terminal domain (BPV-1) for the same DNA. These antibodies discriminate effectively among a number of double- and single-stranded synthetic DNAs with factors ranging from 125-to 20,000-fold the dissociation constant of the specific DNA sequence used in the immunogenic protein-DNA complex. Moreover, they are capable of fine specificity tuning, since they both bind less tightly to another HPV-16 E2 binding site, differing in only 1 base pair in a noncontact flexible region. Beyond the relevance of obtaining a specific anti-DNA response, these results provide a first glance at how DNA as an antigen is recognized specifically by an antibody. The accuracy of the spectroscopic method used for the binding analysis suggests that a detailed mechanistic analysis is attainable. |
author |
Cerutti, María Laura de Prat Gay, Gonzalo |
author_facet |
Cerutti, María Laura de Prat Gay, Gonzalo |
author_sort |
Cerutti, María Laura |
title |
Generation of Sequence-specific, High Affinity Anti-DNA Antibodies |
title_short |
Generation of Sequence-specific, High Affinity Anti-DNA Antibodies |
title_full |
Generation of Sequence-specific, High Affinity Anti-DNA Antibodies |
title_fullStr |
Generation of Sequence-specific, High Affinity Anti-DNA Antibodies |
title_full_unstemmed |
Generation of Sequence-specific, High Affinity Anti-DNA Antibodies |
title_sort |
generation of sequence-specific, high affinity anti-dna antibodies |
publishDate |
2001 |
url |
https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00219258_v276_n16_p12769_Cerutti http://hdl.handle.net/20.500.12110/paper_00219258_v276_n16_p12769_Cerutti |
work_keys_str_mv |
AT ceruttimarialaura generationofsequencespecifichighaffinityantidnaantibodies AT depratgaygonzalo generationofsequencespecifichighaffinityantidnaantibodies |
_version_ |
1768544117247180800 |