Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units

Fil: Duhour, Andrés Esteban. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.

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Detalles Bibliográficos
Autores principales:	Duhour, Andrés Esteban, De La Vega, Hernán, Falco, Liliana, Coviella, Carlos, Velazco, Nicolás, Sandler, Rosana, Rionda, Macarena, Díaz Porres, Mónica, Saravia, Leonardo
Formato:	Artículo Artículo acceptedVersion
Lenguaje:	Inglés Inglés
Publicado:	Journal of Open Research Software 2024
Materias:	Indicator Species Ecological community analysis Samples grouping estimation Ecological Niche Soil Fauna
Acceso en línea:	http://ri.unlu.edu.ar/xmlui/handle/rediunlu/2569
Aporte de:	REDIUNLu - Repositorio Digital Institucional de Acceso Abierto - Universidad Nacional de Luján (UNLu) de Universidad Nacional de Luján (UNLu)

id	I62-R168-rediunlu-2569
record_format	dspace
spelling	I62-R168-rediunlu-25692024-09-04T17:24:50Z Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units Duhour, Andrés Esteban De La Vega, Hernán Falco, Liliana Coviella, Carlos Velazco, Nicolás Sandler, Rosana Rionda, Macarena Díaz Porres, Mónica Saravia, Leonardo Indicator Species Ecological community analysis Samples grouping estimation Ecological Niche Soil Fauna Fil: Duhour, Andrés Esteban. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: De La Vega, Hernán. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: Falco, Liliana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: Coviella, Carlos Eduardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: Velazco, Nicolás. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: Sandler, Rosana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: Rionda, Macarena. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: Díaz Porres, Mónica. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. Fil: Saravia, Leonardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina. The sensitivity of some taxonomic groups to environmental conditions allows for their use as ecological state indicators. In ecological communities, this analysis is of interest to know which species or taxa are indicators of particular environment conditions, taking into account their presence in a set of sampling units. There are different approaches to estimate indicator species, in this work we develop a new tool for this task identifying indicator units defined as species (or taxa) whose observed frequencies are not uniform between environments or groups of sample units. The package provides methods to estimate the indicator species, the belonging of new samples to a given environment, and returns the frequency of taxonomic units in a selected combination of environmental factors as an estimation of the ecological niche. EcoIndicators was tested on a data set provided with the package and on independent samples of soil fauna communities and is freely available in https:// github.com/lsaravia/EcoIndicators. 2024-08-08T17:21:02Z 2024-08-08T17:21:02Z 2023 Article info:eu-repo/semantics/article info:ar-repo/semantics/artículo info:eu-repo/semantics/acceptedVersion http://ri.unlu.edu.ar/xmlui/handle/rediunlu/2569 eng en info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-nd/2.5/ar/ application/pdf application/pdf Journal of Open Research Software
institution	Universidad Nacional de Luján (UNLu)
institution_str	I-62
repository_str	R-168
collection	REDIUNLu - Repositorio Digital Institucional de Acceso Abierto - Universidad Nacional de Luján (UNLu)
language	Inglés Inglés
topic	Indicator Species Ecological community analysis Samples grouping estimation Ecological Niche Soil Fauna
spellingShingle	Indicator Species Ecological community analysis Samples grouping estimation Ecological Niche Soil Fauna Duhour, Andrés Esteban De La Vega, Hernán Falco, Liliana Coviella, Carlos Velazco, Nicolás Sandler, Rosana Rionda, Macarena Díaz Porres, Mónica Saravia, Leonardo Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
topic_facet	Indicator Species Ecological community analysis Samples grouping estimation Ecological Niche Soil Fauna
description	Fil: Duhour, Andrés Esteban. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
format	Article Artículo Artículo acceptedVersion
author	Duhour, Andrés Esteban De La Vega, Hernán Falco, Liliana Coviella, Carlos Velazco, Nicolás Sandler, Rosana Rionda, Macarena Díaz Porres, Mónica Saravia, Leonardo
author_facet	Duhour, Andrés Esteban De La Vega, Hernán Falco, Liliana Coviella, Carlos Velazco, Nicolás Sandler, Rosana Rionda, Macarena Díaz Porres, Mónica Saravia, Leonardo
author_sort	Duhour, Andrés Esteban
title	Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_short	Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_full	Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_fullStr	Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_full_unstemmed	Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_sort	ecoindicators: an r package for the identification of indicator taxonomic units
publisher	Journal of Open Research Software
publishDate	2024
url	http://ri.unlu.edu.ar/xmlui/handle/rediunlu/2569
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Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units

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