De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response
Palaemonetes argentinus, an abundant freshwater prawn species in the northern and central region of Argentina, has been used as a bioindicator of environmental pollutants as it displays a very high sensitivity to pollutants exposure. Despite their extraordinary ecological relevance, a lack of genomi...
Guardado en:
| Autores principales: | , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Articulo Preprint |
| Lenguaje: | Inglés |
| Publicado: |
2018
|
| Materias: | |
| Acceso en línea: | http://sedici.unlp.edu.ar/handle/10915/119461 |
| Aporte de: |
| id |
I19-R120-10915-119461 |
|---|---|
| record_format |
dspace |
| institution |
Universidad Nacional de La Plata |
| institution_str |
I-19 |
| repository_str |
R-120 |
| collection |
SEDICI (UNLP) |
| language |
Inglés |
| topic |
Bioquímica Zoología Palaemonetes Argentinus Shrimp Prawn Transcriptome Detoxification Crustacea |
| spellingShingle |
Bioquímica Zoología Palaemonetes Argentinus Shrimp Prawn Transcriptome Detoxification Crustacea García, Carlos Fernando Pedrini, Nicolás Sánchez Paz, Arturo Reyna Blanco, Carlos S. Lavarías, Sabrina María Luisa Muhlia Almazán, Adriana Fernández Giménez, Analía Laino, Aldana de la Re Vega, Enrique Lukaszewicz, Germán López Zavala, Alonso A. Brieba, Luis G. Criscitello, Michael F. Carrasco Miranda, Jesús S. García Orozco, Karina D. Ochoa Leyva, Adrián Rudiño Piñera, Enrique Sanchez Flores, Alejandro Sotelo Mundo, Rogerio R. De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response |
| topic_facet |
Bioquímica Zoología Palaemonetes Argentinus Shrimp Prawn Transcriptome Detoxification Crustacea |
| description |
Palaemonetes argentinus, an abundant freshwater prawn species in the northern and central region of Argentina, has been used as a bioindicator of environmental pollutants as it displays a very high sensitivity to pollutants exposure. Despite their extraordinary ecological relevance, a lack of genomic information has hindered a more thorough understanding of the molecular mechanisms potentially involved in detoxification processes of this species. Thus, transcriptomic profiling studies represent a promising approach to overcome the limitations imposed by the lack of extensive genomic resources for P. argentinus, and may improve the understanding of its physiological and molecular response triggered by pollutants. This work represents the first comprehensive transcriptome-based characterization of the non-model species P. argentinus to generate functional genomic annotations and provides valuable resources for future genetic studies.
Trinity de novo assembly consisted of 24,738 transcripts with high representation of detoxification (phase I and II), anti-oxidation, osmoregulation pathways and DNA replication and bioenergetics. This crustacean transcriptome provides valuable molecular information about detoxification and biochemical processes that could be applied as biomarkers in further ecotoxicology studies. |
| format |
Articulo Preprint |
| author |
García, Carlos Fernando Pedrini, Nicolás Sánchez Paz, Arturo Reyna Blanco, Carlos S. Lavarías, Sabrina María Luisa Muhlia Almazán, Adriana Fernández Giménez, Analía Laino, Aldana de la Re Vega, Enrique Lukaszewicz, Germán López Zavala, Alonso A. Brieba, Luis G. Criscitello, Michael F. Carrasco Miranda, Jesús S. García Orozco, Karina D. Ochoa Leyva, Adrián Rudiño Piñera, Enrique Sanchez Flores, Alejandro Sotelo Mundo, Rogerio R. |
| author_facet |
García, Carlos Fernando Pedrini, Nicolás Sánchez Paz, Arturo Reyna Blanco, Carlos S. Lavarías, Sabrina María Luisa Muhlia Almazán, Adriana Fernández Giménez, Analía Laino, Aldana de la Re Vega, Enrique Lukaszewicz, Germán López Zavala, Alonso A. Brieba, Luis G. Criscitello, Michael F. Carrasco Miranda, Jesús S. García Orozco, Karina D. Ochoa Leyva, Adrián Rudiño Piñera, Enrique Sanchez Flores, Alejandro Sotelo Mundo, Rogerio R. |
| author_sort |
García, Carlos Fernando |
| title |
De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response |
| title_short |
De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response |
| title_full |
De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response |
| title_fullStr |
De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response |
| title_full_unstemmed |
De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response |
| title_sort |
de novo assembly and transcriptome characterization of the freshwater prawn palaemonetes argentinus: implications for a detoxification response |
| publishDate |
2018 |
| url |
http://sedici.unlp.edu.ar/handle/10915/119461 |
| work_keys_str_mv |
AT garciacarlosfernando denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT pedrininicolas denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT sanchezpazarturo denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT reynablancocarloss denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT lavariassabrinamarialuisa denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT muhliaalmazanadriana denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT fernandezgimenezanalia denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT lainoaldana denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT delarevegaenrique denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT lukaszewiczgerman denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT lopezzavalaalonsoa denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT briebaluisg denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT criscitellomichaelf denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT carrascomirandajesuss denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT garciaorozcokarinad denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT ochoaleyvaadrian denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT rudinopineraenrique denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT sanchezfloresalejandro denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse AT sotelomundorogerior denovoassemblyandtranscriptomecharacterizationofthefreshwaterprawnpalaemonetesargentinusimplicationsforadetoxificationresponse |
| bdutipo_str |
Repositorios |
| _version_ |
1764820448436027393 |