Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
SUMMARY: We present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional scaling algorithm. Our tool is aimed at determining the ancestry of unknown sam...
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Autores principales: | , , , , , , , , , |
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Formato: | Artículo publishedVersion |
Lenguaje: | Inglés |
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Oxford University Press
2014
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Acceso en línea: | http://hdl.handle.net/11336/136694 http://suquia.ffyh.unc.edu.ar/handle/11336/136694 |
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I10-R181-11336-136694 |
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record_format |
dspace |
institution |
Universidad Nacional de Córdoba |
institution_str |
I-10 |
repository_str |
R-181 |
collection |
Suquía - Instituto de Antropología de Córdoba (IDACOR, CONICET y UNC) |
language |
Inglés |
topic |
ANCESTROS GENETIC DNA https://purl.org/becyt/ford/6.1 https://purl.org/becyt/ford/6 |
spellingShingle |
ANCESTROS GENETIC DNA https://purl.org/becyt/ford/6.1 https://purl.org/becyt/ford/6 Malaspinas, Anna Sapfo Tange, Ole Moreno Mayar, José Víctor Rasmussen, Morten DeGiorgio, Michael Wang, Yong Valdiosera, Cristina E. Politis, Gustavo Gabriel Willerslev, Eske Nielsen, Rasmus Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) |
topic_facet |
ANCESTROS GENETIC DNA https://purl.org/becyt/ford/6.1 https://purl.org/becyt/ford/6 |
description |
SUMMARY: We present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional scaling algorithm. Our tool is aimed at determining the ancestry of unknown samples-typical of ancient DNA data-particularly when only low amounts of data are available for those samples. |
format |
Artículo Artículo publishedVersion |
author |
Malaspinas, Anna Sapfo Tange, Ole Moreno Mayar, José Víctor Rasmussen, Morten DeGiorgio, Michael Wang, Yong Valdiosera, Cristina E. Politis, Gustavo Gabriel Willerslev, Eske Nielsen, Rasmus |
author_facet |
Malaspinas, Anna Sapfo Tange, Ole Moreno Mayar, José Víctor Rasmussen, Morten DeGiorgio, Michael Wang, Yong Valdiosera, Cristina E. Politis, Gustavo Gabriel Willerslev, Eske Nielsen, Rasmus |
author_sort |
Malaspinas, Anna Sapfo |
title |
Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) |
title_short |
Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) |
title_full |
Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) |
title_fullStr |
Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) |
title_full_unstemmed |
Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) |
title_sort |
bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (mds) |
publisher |
Oxford University Press |
publishDate |
2014 |
url |
http://hdl.handle.net/11336/136694 http://suquia.ffyh.unc.edu.ar/handle/11336/136694 |
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