Microsatellite variation in maize landraces from Northwestern Argentina: Genetic diversity, population structure and racial affiliations

The highland region or Northwestern Argentina (NWA) is one of the southernmost areas of native maize cultivation and constitutes an expansion of the peruvian Andes sphere of influence. To examine the genetic diversity and racial affiliations of the landraces cultivated in this area, 18 microsatellit...

Descripción completa

Guardado en:
Detalles Bibliográficos
Autor principal: Lia, V.V
Otros Autores: Poggio, L., Confalonieri, V.A
Formato: Capítulo de libro
Lenguaje:Inglés
Publicado: 2009
Materias:
Acceso en línea:Registro en Scopus
DOI
Handle
Registro en la Biblioteca Digital
Aporte de:Registro referencial: Solicitar el recurso aquí
LEADER 19721caa a22018617a 4500
001 PAPER-8463
003 AR-BaUEN
005 20230518203816.0
008 190411s2009 xx ||||fo|||| 00| 0 eng|d
024 7 |2 scopus  |a 2-s2.0-70349675763 
024 7 |2 cas  |a DNA, 9007-49-2; DNA, 9007-49-2; DNA, Plant; Genetic Markers 
040 |a Scopus  |b spa  |c AR-BaUEN  |d AR-BaUEN 
030 |a THAGA 
100 1 |a Lia, V.V. 
245 1 0 |a Microsatellite variation in maize landraces from Northwestern Argentina: Genetic diversity, population structure and racial affiliations 
260 |c 2009 
270 1 0 |m Lia, V. V.; Instituto de Biotecnología, CICVyA, INTA, Los Reseros y Las Cabañas s/n, B1686ICG Hurlingham, Buenos Aires, Argentina; email: vlia@cnia.inta.gov.ar 
506 |2 openaire  |e Política editorial 
504 |a Anderson, E., Cutler, H.C., Races of Zea mays: I. Their recognition and classification (1942) Ann Mo Bot Gard, 29, pp. 69-89. , 10.2307/2394331 
504 |a Bracco, M., Genetic diversity in maize landraces from indigenous settlements of Northeastern Argentina (2009) Genetica, 135, pp. 39-49 
504 |a Bretting, P.K., Goodman, M.M., Stuber, C.W., Karyological and isozyme variation in West Indian and allied American mainland races of maize (1987) Am J Bot, 74, pp. 1601-1613. , 10.2307/2444129 1:CAS:528:DyaL1cXjsV2hsQ%3D%3D 
504 |a Bretting, P.K., Goodman, M.M., Stuber, C.W., Isozymatic variation in Guatemalan races of maize (1990) Am J Bot, 77, pp. 211-225. , 10.2307/2444643 
504 |a Brieger, F.G., Gurgel, J.T.A., Paterniani, E., Blumenschein, A., Alleoni, M.R., (1958) The Races of Maize in Brazil and Other Eastern South American Countries, , National Academy of ScienceNational Research Council Publications, Washington, DC 
504 |a Brunson, A.M., Bower, C.W., Pop corn (1931) USDA Farmers Bull, 1679, p. 17 
504 |a Brush, S.B., Perales, H.R., A maize landscape: Ethnicity and agro-biodiversity in Chiapas Mexico (2007) Agriculture, Ecosystems and Environment, 121 (3), pp. 211-221. , DOI 10.1016/j.agee.2006.12.018, PII S0167880906004452 
504 |a Cámara Hernández, J., Miante Alzogaray, A.M., Las razas de maíz de Jujuy y Salta Argentina (1997) Proc 1er Taller Internacional de Recursos Fitogenéticos Del Noroeste Argentino, 1, pp. 19-23 
504 |a Camus-Kulandaivelu, L., Veyrieras, J.B., Madur, D., Maize adaptation to temperate climate: Relationship between population structure and polymorphism in the Dwarf8 gene (2006) Genetics, 172 (4), pp. 2449-2463. , 16415370 10.1534/genetics.105.048603 1:CAS:528:DC%2BD28XkvFOgt7s%3D 
504 |a Camus-Kulandaivelu, L., Veyrieras, J.-B., Gouesnard, B., Charcosset, A., Manicacci, D., Evaluating the reliability of structure outputs in case of relatedness between individuals (2007) Crop Sci, 47, pp. 887-890 
504 |a Colasanti, J., Yuan, Z., Sundaresan, V., The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize (1998) Cell, 93 (4), pp. 593-603. , DOI 10.1016/S0092-8674(00)81188-5 
504 |a Doebley, J., Goodman, M.M., Isoenzymatic variation in Zea (Gramineae) (1984) Syst Bot, 9, pp. 203-218. , 10.2307/2418824 
504 |a Doebley, J., Goodman, M.M., Stuber, C.W., Isozyme variation in maize from the southwestern United States taxonomic and anthropological implications (1983) Maydica, 28, pp. 94-120 
504 |a Doebley, J., Goodman, M.M., Stuber, C.W., Isozyme variation in the races of maize from Mexico (1985) Am J Bot, 72, pp. 629-639. , 10.2307/2443674 1:CAS:528:DyaL2MXltVaitrw%3D 
504 |a Doebley, J., Goodman, M.M., Stuber, C.W., Exceptional genetic divergence of Northern Flint Corn (1986) Am J Bot, 73, pp. 64-69. , 10.2307/2444278 
504 |a Doebley, J., Goodman, M.M., Stuber, C.W., Patterns of isozyme variation between maize and Mexican Annual teosinte (1987) Econ Bot, 41, pp. 234-246 
504 |a Doebley, J., Wendel, J.F., Smith, J.S.C., Stuber, C.W., Goodman, M.M., The origin of cornbelt maize: The isozyme evidence (1988) Econ Bot, 42, pp. 120-131 
504 |a Dubreuil, P., Charcosset, A., Genetic diversity within and among maize populations: A comparison between isozyme and nuclear RLFP loci (1998) Theoretical and Applied Genetics, 96 (5), pp. 577-587. , DOI 10.1007/s001220050776 
504 |a El Mousadik, A., Petit, R., High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa (L.) Skeels) endemic to Morocco (1996) Theor Appl Genet, 92, pp. 832-839. , 10.1007/BF00221895 
504 |a Evanno, G., Regnaut, S., Goudet, J., Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study (2005) Molecular Ecology, 14 (8), pp. 2611-2620. , DOI 10.1111/j.1365-294X.2005.02553.x 
504 |a Falush, D., Stephens, M., Pritchard, J.K., Inference of population structure: Extensions to linked loci and correlated allele frequencies (2003) Genetics, 164, pp. 1567-1587. , 12930761 1:CAS:528:DC%2BD3sXnvF2ntrk%3D 
504 |a Felsenstein, J., (1991) Phylip (Phylogeny Inference Package), , University of Washington, Washington 
504 |a Gaggiotti, O.E., Lange, O., Rassmann, K., Gliddon, C., A comparison of two indirect methods for estimating average levels of gene flow using microsatellite data (1999) Molecular Ecology, 8 (9), pp. 1513-1520. , DOI 10.1046/j.1365-294X.1999.00730.x 
504 |a Gale, M.D., Devos, K.M., Comparative genetics in the grasses (1998) Proceedings of the National Academy of Sciences of the United States of America, 95 (5), pp. 1971-1974. , DOI 10.1073/pnas.95.5.1971 
504 |a Goodman, M.M., Genetic and germplasm stocks worth conserving (1990) J Hered, 81, pp. 11-16. , 2332611 1:STN:280:DyaK3c3jslCgtg%3D%3D 
504 |a Goodman, M.M., Broadening the U.S. germplasm base (2005) Maydica, 50, pp. 203-214 
504 |a Goodman, M.M., McK, B.R., The races of Maize IV: Tentative grouping of 219 Latin American Races (1977) Econ Bot, 31, pp. 204-221 
504 |a Goodman, M.M., Brown, W.L., (1988) Amer Soc Agron, pp. 33-79. , Races of corn. In: Sprague GF, Dudley JW (eds) Corn and corn improvement Madison, WI 
504 |a Goodman, M.M., Stuber, C.W., Races of maize. VI. Isozyme variation among races of maize in Bolivia (1983) Maydica, 28, pp. 169-187 
504 |a Goudet, J., Fstat version 1.2: A computer program to calculate F-statistics (1995) J Hered, 86, pp. 485-486 
504 |a Goudet, J., (2001) FSTAT, A Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9.3), , http://www.unil.ch/izea/softwares/fstat.html.UpdatedfromGoudet1995, Available from 
504 |a Hardy, O.J., Charbonnel, N., Freville, H., Heuertz, M., Microsatellite allele sizes: A simple test to assess their significance on genetic differentiation (2003) Genetics, 163, pp. 1467-1482. , 12702690 1:CAS:528:DC%2BD3sXjvVensb4%3D 
504 |a Hoisington, D., Khairallah, M., Reeves, T., Ribaut, J.-M., Skovmand, B., Taba, S., Warburton, M., Plant genetic resources: What can they contribute toward increased crop productivity? (1999) Proceedings of the National Academy of Sciences of the United States of America, 96 (11), pp. 5937-5943. , DOI 10.1073/pnas.96.11.5937 
504 |a Horovitz, S., Distribución geográfica de factores genéticos en los maíces autóctonos del norte argentino (1935) Rev Arg Agron, 2, pp. 133-135 
504 |a Kahler, A.L., Hallauer, A.R., Gardner, C., Allozyme polymorphism within and among open-pollinated and adapted exotic populations of maize (1986) Theor Appl Genet, 72, pp. 592-601. , 10.1007/BF00288996 1:CAS:528:DyaL28XlsV2qsLw%3D 
504 |a Lia, V.V., Confalonieri, V.A., Poggio, L., B chromosome polymorphism in maize landraces: Adaptive vs. demographic hypothesis of clinal variation (2007) Genetics, 177 (2), pp. 895-904. , http://www.genetics.org/cgi/reprint/177/2/895, DOI 10.1534/genetics.107.075440 
504 |a Liu, K., Goodman, M., Muse, S., Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites (2003) Genetics, 165, pp. 2117-2128. , 14704191 1:CAS:528:DC%2BD2cXnvFOltA%3D%3D 
504 |a Matsuoka, Y., Vigouroux, Y., Goodman, M.M., Sanchez, J.G., Buckler, E., Doebley, J., A single domestication for maize shown by multilocus microsatellite genotyping (2002) Proceedings of the National Academy of Sciences of the United States of America, 99 (9), pp. 6080-6084. , DOI 10.1073/pnas.052125199 
504 |a Matsuoka, Y., Mitchell, S.E., Kresovich, S., Goodman, M., Doebley, J., Microsatellites in Zea - Variability, patterns of mutations, and use for evolutionary studies (2002) Theoretical and Applied Genetics, 104 (2-3), pp. 436-450. , DOI 10.1007/s001220100694 
504 |a McClintock, B., Kato, T.A., Blumenschein, A., (1981) Chromosome Constitution of the Races of Maize, Its Significance in the Interpretation of Relationships between Races and Varieties in the Americas, , Colegio de Postgraduados Chapingo 
504 |a Minch, E., Ruiz Linares, A., Goldstein, D., Feldman, M., Cavalli-Sforza, L.L., (1996) Microsat (Version 1.5b): A Computer Program for Calculating Various Statistics on Microsatellite Allele Data, , http://hpgl.stanford.edu/projects/microsat/), (Program available from: 
504 |a Nei, M., Genetic distance between populations (1972) Am Nat, 106, pp. 283-292. , 10.1086/282771 
504 |a Nei, M., (1987) Molecular Evolutionary Genetics, , Columbia University Press New York 
504 |a Nielsen, R., Slatkin, M., Likelihood analysis of ongoing gene flow and historical association (2000) Evolution, 54, pp. 44-50. , 10937182 1:CAS:528:DC%2BD3cXis1egtLg%3D 
504 |a Nybom, H., Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants (2004) Molecular Ecology, 13 (5), pp. 1143-1155. , DOI 10.1111/j.1365-294X.2004.02141.x 
504 |a Page, R.D.M., TREEVIEW: An application to display phylogenetic trees on personal computers (1996) Comput Appl Biosci, 12, pp. 357-358. , 8902363 1:STN:280:DyaK2s%2FlvVSgtg%3D%3D 
504 |a Perales, H.R., Benz, B.F., Brush, S.B., Maize diversity and ethnolinguistic diversity in Chiapas, Mexico (2005) Proceedings of the National Academy of Sciences of the United States of America, 102 (3), pp. 949-954. , DOI 10.1073/pnas.0408701102 
504 |a Poggio, L., Rosato, M., Chiavarino, A.M., Naranjo, C.A., Genome size and environmental correlations in maize (Zea mays ssp. mays, Poaceae) (1998) Annals of Botany, 82 (SUPPL. A), pp. 107-115. , DOI 10.1006/anbo.1998.0757 
504 |a Pressoir, G., Berthaud, J., Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico (2004) Heredity, 92 (2), pp. 88-94. , DOI 10.1038/sj.hdy.6800387 
504 |a Pritchard, J.K., Wen, W., (2003) Documentation for STRUCTURE Software: Version 2, , http://pritch.bsd.uchicago.edu 
504 |a Pritchard, J.K., Stephens, M., Donnelly, P., Inference of population structure using multilocus genotype data (2000) Genetics, 155, pp. 945-959. , 10835412 1:STN:280:DC%2BD3cvislKrtA%3D%3D 
504 |a Raymond, M., Rousset, F., GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism (1995) J Hered, 86, pp. 248-249 
504 |a Reif, J.C., Xia, X.C., Melchinger, A.E., Genetic diversity determined within and among CIMMYT maize populations of tropical, subtropical, and temperate germplasm by SSR markers (2004) Crop Sci, 44, pp. 326-334. , 1:CAS:528:DC%2BD2cXptFehsQ%3D%3D 
504 |a Reif, J.C., Warburton, M.L., Xia, X.C., Hoisington, D.A., Crossa, J., Taba, S., Muminovic, J., Melchinger, A.E., Grouping of accessions of Mexican races of maize revisited with SSR markers (2006) Theoretical and Applied Genetics, 113 (2), pp. 177-185. , DOI 10.1007/s00122-006-0283-5 
504 |a Rice, W., Analysing tables of statistical tests (1989) Evolution, 43, pp. 223-225. , 10.2307/2409177 
504 |a Roberts, L.M., Grant, U.J., Ramírez, E.R., Hatheway, W.H., Smith, P., (1957) Races of Maize in Colombia, , National Academy of Science-National Research Council Publications Washington, DC 
504 |a Rosato, M., Chiavarino, A.M., Naranjo, C.A., Hernandez, J.C., Poggio, L., Genome size and numerical polymorphism for the B chromosome in races of maize (Zea mays ssp. mays, Poaceae) (1998) American Journal of Botany, 85 (2), pp. 168-174 
504 |a Saitou, N., Nei, M., The neighbor-joining method: A new method for reconstructing phylogenetic trees (1987) Mol Biol Evol, 4, pp. 406-425. , 3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D 
504 |a Sanchez, G.J., Stuber, C.W., Goodman, M.M., Isozymatic diversity in the races of maize of the Americas (2000) Maydica, 45, pp. 185-203 
504 |a Santacruz-Varela, A., Widrlechner, M.P., Ziegler, K.E., Phylogenetic relationships among North American popcorns and their evolutionary links to Mexican and South American popcorns (2004) Crop Sci, 44, p. 1456. , 1:CAS:528:DC%2BD2cXmsVOnsbo%3D 
504 |a Slatkin, M., A measure of population subdivision based on microsatellite allele frequencies (1995) Genetics, 139, pp. 457-462. , 7705646 1:STN:280:DyaK2M3itVKrtw%3D%3D 
504 |a Taller, J.M., Bernardo, R., Diverse adapted populations for improving northern maize inbreds (2004) Crop Sci, 44, pp. 1444-1449 
504 |a Tarter, J.A., Goodman, M.M., Holland, J.B., Testcross performance of semiexotic inbred lines derived from Latin American maize accessions (2003) Crop Sci, 43, pp. 2272-2278 
504 |a Thornsberry, J.M., Goodman, M.M., Doebley, J., Kresovich, S., Nielsen, D., Buckler, E.S., Dwarf8 polymorphisms associate with variation in flowering time (2001) Nature Genetics, 28 (3), pp. 286-289. , DOI 10.1038/90135 
504 |a Torregrosa, M., Cámara Hernandez, J., Solari, L., Clasificación preliminar de formas raciales de maíz y su distribución geográfica en la República Argentina (1980) Actas II Congreso Nacional de Maíz, 1, pp. 5-17 
504 |a Vigouroux, Y., Glaubitz, J.C., Matsuoka, Y., Population structure and genetic diversity of New World maize races assessed by DNA microsatellites (2008) Am J Bot, 95, pp. 1240-1253. , 10.3732/ajb.0800097 
504 |a Waples, R.S., Gaggiotti, O., What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity (2006) Mol Ecol, 15, pp. 1419-1439. , 16629801 10.1111/j.1365-294X.2006.02890.x 1:CAS:528:DC%2BD28XlsVCjur4%3D 
504 |a Warburton, M.L., Xianchua, X., Crossa, J., Genetic characterization of CIMMYT inbred lines and open pollinated populations using large scale fingerprinting methods (2002) Crop Sci, 42, pp. 1832-1840 
504 |a Weir, B., Cockerham, C.C., Estimating F-statistics for the analysis of population structure (1984) Evolution, 38, pp. 1358-1370. , 10.2307/2408641 
504 |a Wellhausen, E.J., Roberts, L.M., Hernandez, E.M.P., (1952) Races of Maize in Mexico, , Harvard University Press Cambridge 
504 |a Wright, S., (1978) Evolution and the Genetics of Populations, Volume 4: Variability Within and among Natural Populations, , 3 University of Chicago Press Chicago 
520 3 |a The highland region or Northwestern Argentina (NWA) is one of the southernmost areas of native maize cultivation and constitutes an expansion of the peruvian Andes sphere of influence. To examine the genetic diversity and racial affiliations of the landraces cultivated in this area, 18 microsatellite markers were used to characterize 147 individuals from 6 maize races representative of traditional materials. For the whole data set, a total of 184 alleles were found, with an average of 10.2 alleles per locus. The average gene diversity was 0.571. The observed patterns of genetic differentiation suggest that historical association is probably the main factor in shaping population structure for the landraces studied here. In agreement with morphological and cytogenetic data, Bayesian analysis of NWA landraces revealed the occurrence of three main gene pools. Assessment of racial affiliations using a combined dataset including previous data on American landraces showed a clear relationship between one of these gene pools and typical Andean races, whereas the remaining two gene pools exhibited a closer association to Caribbean accessions and native germplasm from the United States, respectively. These results highlight the importance of integrating regional genetic studies if a deeper understanding of maize diversification and dispersal is to be achieved. © 2009 Springer-Verlag.  |l eng 
593 |a Departamento de Ecología, Facultad de Ciencias Exactas y Naturales, Ciudad Universitaria, 4to. Piso, Pabellón II, Ciudad Autónoma de Buenos Aires C1428EHA, Argentina 
593 |a Consejo Nacional de Investigaciones Científicas y Técnicas, Avenida Rivadavia 1917, Ciudad Autónoma de Buenos Aires C1033AAJ, Argentina 
593 |a Instituto de Biotecnología, CICVyA, INTA, Los Reseros y Las Cabañas s/n, B1686ICG Hurlingham, Buenos Aires, Argentina 
651 4 |a ARGENTINA 
651 4 |a ARGENTINA 
651 4 |a ARGENTINA 
690 1 0 |a BAYESIAN ANALYSIS 
690 1 0 |a DATA SETS 
690 1 0 |a GENE DIVERSITY 
690 1 0 |a GENE POOLS 
690 1 0 |a GENETIC DIFFERENTIATION 
690 1 0 |a GENETIC DIVERSITY 
690 1 0 |a GENETIC STUDIES 
690 1 0 |a GERMPLASMS 
690 1 0 |a LANDRACES 
690 1 0 |a MICRO SATELLITE 
690 1 0 |a MICROSATELLITE MARKERS 
690 1 0 |a POPULATION STRUCTURES 
690 1 0 |a SPHERE OF INFLUENCES 
690 1 0 |a TRADITIONAL MATERIALS 
690 1 0 |a LAKES 
690 1 0 |a DNA 
690 1 0 |a MICROSATELLITE DNA 
690 1 0 |a PLANT DNA 
690 1 0 |a ALLELE 
690 1 0 |a ARTICLE 
690 1 0 |a BAYES THEOREM 
690 1 0 |a CLASSIFICATION 
690 1 0 |a CROP 
690 1 0 |a GENE FREQUENCY 
690 1 0 |a GENE POOL 
690 1 0 |a GENETIC MARKER 
690 1 0 |a GENETIC VARIABILITY 
690 1 0 |a GENETICS 
690 1 0 |a GENOTYPE 
690 1 0 |a GEOGRAPHY 
690 1 0 |a ISOLATION AND PURIFICATION 
690 1 0 |a MAIZE 
690 1 0 |a MOLECULAR EVOLUTION 
690 1 0 |a PLANT CHROMOSOME 
690 1 0 |a STATISTICAL MODEL 
690 1 0 |a ALLELES 
690 1 0 |a BAYES THEOREM 
690 1 0 |a CHROMOSOMES, PLANT 
690 1 0 |a CROPS, AGRICULTURAL 
690 1 0 |a DNA 
690 1 0 |a DNA, PLANT 
690 1 0 |a EVOLUTION, MOLECULAR 
690 1 0 |a GENE FREQUENCY 
690 1 0 |a GENE POOL 
690 1 0 |a GENETIC MARKERS 
690 1 0 |a GENETIC VARIATION 
690 1 0 |a GENOTYPE 
690 1 0 |a GEOGRAPHY 
690 1 0 |a MICROSATELLITE REPEATS 
690 1 0 |a MODELS, STATISTICAL 
690 1 0 |a ZEA MAYS 
690 1 0 |a ZEA MAYS 
700 1 |a Poggio, L. 
700 1 |a Confalonieri, V.A. 
773 0 |d 2009  |g v. 119  |h pp. 1053-1067  |k n. 6  |p Theor. Appl. Genet.  |x 00405752  |w (AR-BaUEN)CENRE-2304  |t Theoretical and Applied Genetics 
856 4 1 |u https://www.scopus.com/inward/record.uri?eid=2-s2.0-70349675763&doi=10.1007%2fs00122-009-1108-0&partnerID=40&md5=a52b7c97c8ce129fc091a71361d9d00a  |y Registro en Scopus 
856 4 0 |u https://doi.org/10.1007/s00122-009-1108-0  |y DOI 
856 4 0 |u https://hdl.handle.net/20.500.12110/paper_00405752_v119_n6_p1053_Lia  |y Handle 
856 4 0 |u https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00405752_v119_n6_p1053_Lia  |y Registro en la Biblioteca Digital 
961 |a paper_00405752_v119_n6_p1053_Lia  |b paper  |c PE 
962 |a info:eu-repo/semantics/article  |a info:ar-repo/semantics/artículo  |b info:eu-repo/semantics/publishedVersion 
999 |c 69416