Gene expression patterns in Euglena gracilis: Insights into the cellular response to environmental stress
To better understand Euglena gracilis gene expression under different stress conditions (Chromium, Streptomycin or darkness), we undertook a survey of the E. gracilis transcriptome by cDNA sequencing and microarray analysis. First, we constructed a non-normalized cDNA library from the E. gracilis UT...
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2007
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| 100 | 1 | |a dos Santos Ferreira, V. | |
| 245 | 1 | 0 | |a Gene expression patterns in Euglena gracilis: Insights into the cellular response to environmental stress |
| 260 | |c 2007 | ||
| 270 | 1 | 0 | |m Levin, M.J.; Laboratorio de Biología Molecular de la Enfermedad de Chagas (LaBMECh) INGEBI, National Research Council (CONICET), Centro de Genómica Aplicada (CeGA), Vuelta de Obligado 2490 2P, 1428 Buenos Aires, Argentina; email: mlevin@dna.uba.ar |
| 506 | |2 openaire |e Política editorial | ||
| 504 | |a Agy, M.B., Wambach, M., Foy, K., Katze, M.G., Expression of cellular genes in CD4 positive lymphoid cells infected by the human immunodeficiency virus, HIV-1: evidence for a host protein synthesis shut-off induced by cellular mRNA degradation (1990) Virology, 177 (1), pp. 251-258 | ||
| 504 | |a Aiba, H., Transcription of the Escherichia coli adenylate cyclase gene is negatively regulated by cAMP receptor protein (1985) J. Biol. Chem., 260, pp. 3063-3070 | ||
| 504 | |a Ben-Dov, C.P., Levin, M.J., Vazquez, M.P., Anlysis of the highly efficient pre-mRNA processing region HX1 of Tripanosoma cruzi (2005) Mol. Biochem. Parasitol., 140 (1), pp. 97-105 | ||
| 504 | |a Bowler, C., Chua, N., Emerging themes of plant signal transduction (1994) The Plant Cell, 6, pp. 1529-1541 | ||
| 504 | |a Buetow, D., (1982) The Biology of Euglena, III, pp. 200-201. , Academic Press, New York | ||
| 504 | |a Cabiscol, E., Belli, G., Tamarit, J., Echave, P., Herrero, E., Ros, J., Mitochondrial Hsp60, resistance to oxidative stress, and the labile iron pool are closely connected in Saccharomyces cerevisiae (2002) J. Biol. Chem., 277 (46), pp. 44531-44538 | ||
| 504 | |a Cavalier-Smith, T., Kingdom Protozoa and its 18 phyla (1993) Microbiol. Rev., 57 (4), pp. 953-994 | ||
| 504 | |a Cervantes, C., Interactions of Chromium with microorganisms and plants (2001) FEMS Microbiol. Rev., 25 (3), pp. 335-347 | ||
| 504 | |a Clevel, W.S., Devlin, S.J., Locally weighted regression: an approach to regression analysis by local fitting (1988) J. Am. Stat. Assoc., 83, pp. 596-610 | ||
| 504 | |a Donahue, J.L., Okpodu, C.M., Cramer, C.L., Grabau, E.A., Alscher, R.G., Responses of antioxidants to paraquat in pea leaves (relationships to resistance) (1997) Plant Physiol., 113 (1), pp. 249-257 | ||
| 504 | |a Ernani, P., Sigaud-Kutner, T., Leitao, M., Okawoto, O., Morse, D., Colepicolo, P., Heavy metal induced oxidative stress in algae (2003) J. Phycol., 39, pp. 1008-1018 | ||
| 504 | |a Ewing, B., Hillier, M., Wendl, M., Green, P., Base-calling of automated sequencer traces using Phred. I. Accuracy assessment (1998) Genome Res., 8, pp. 175-185 | ||
| 504 | |a Frantz, C., Ebel, C., Paulus, F., Imbault, P., Characterization of trans-splicing in Euglenoids (2000) Curr. Genet., 37 (6), pp. 349-355 | ||
| 504 | |a Gajdosova, J., Reichrtova, E., Different growth response of Euglena gracilis to Hg, Cd, Cr and Ni compounds (1996) Anal. Bioanal. Chem., 354 (5-6), pp. 641-642 | ||
| 504 | |a Gibbs, S.P., The chloroplast of Euglena may have evolved from symbiotic green algae (1978) Can. J. Bot., 56, pp. 2883-2889 | ||
| 504 | |a Greenwood, S., Gray, M., Processing of precursor rRNA in Euglena gracilis: identification of intermediates in the pathway to a highly fragmented large subunit rRNA (1998) Biochim. Biophys. Acta, 1443, pp. 128-138 | ||
| 504 | |a Guerrieri, F., Micelli, S., Massagli, C., Gallucci, E., Papa, S., Interaction of the aminoglycoside antibiotic dihydrostreptomycin with the H+-ATPase of mitochondria (1984) Biochem. Pharmacol., 33 (15), pp. 2505-2510 | ||
| 504 | |a Hannaert, V., Plant-like traits associated with metabolism of Trypanosoma parasite (2003) Proc. Natl. Acad. Sci. U. S. A., 100 (3), pp. 1067-1071 | ||
| 504 | |a Henze, K., Badr, A., Wettern, M., Cerff, R., Martin, W., A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution (1995) Proc. Natl. Acad. Sci. U. S. A., 92, pp. 9122-9126 | ||
| 504 | |a Kucharski, R., Maleszka, R., Evaluation of differential gene expression during behavioral development in the honeybee using microarrays and Northern blots (2002) Genome Biol., 3 (2). , (research 0007, 1-0007, 9) | ||
| 504 | |a Leander, B., Did trypanosomatid parasites have photosynthetic ancestors? (2004) Trends Microbiol., 12 (6), pp. 251-258 | ||
| 504 | |a Linton, E.W., Nudelman, M.A., Conforti, V., Triemer, R.E., A molecular analysis of the euglenophytes using SSU rDNA (2000) J. Phycol., 36, pp. 740-746 | ||
| 504 | |a Manusadzianas, L., Maksimov, G., Darginaviciene, J., Jurkoniene, S., Sadauskas, K., Vitkus, R., Response of the chlorophyte Nitellopsis obtusa to heavy metals at the cellular, cell membrane and enzyme levels (2002) Environ. Toxicol., 17 (3), pp. 275-283 | ||
| 504 | |a Margulis, L., Symbiosis in cell evolution (1993) Microbial Communities in the Archean and Proterozoic Eons, p. 452. , W. Freeman and Company, New York | ||
| 504 | |a Marin, B., Palm, A., Klingberg, M., Melkonian, M., Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure (2003) Protist, 154, pp. 99-145 | ||
| 504 | |a Maslov, D.A., Yasuhira, S., Simpson, L., Phylogenetic affinities of Diplonema within Euglenozoa as inferred from SSU rRNA gene and partial COI protein sequences (1999) Protist, 150 (1), pp. 33-42 | ||
| 504 | |a McCord, J.M., Fridovich, I., Superoxide dismutase. An enzymic function for erythrocuprein (hemocuprein) (1969) J. Biol. Chem., 244 (22), pp. 6049-6055 | ||
| 504 | |a Müllner, A.N., Angler, D.G., Samuel, R., Linton, E.W., Triemer, R.E., Phylogenetic analysis of phagotrophic, phototrophic, and osmotrophic euglenoids by using the nuclear 18S rDNA sequence (2001) Int. J. Syst. Evol. Microbiol., 51, pp. 783-791 | ||
| 504 | |a Nozaki, H., Ohta, N., Matsuzaki, M., Misumi, O., Kuroiwa, T., Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences (2003) J. Mol. Evol., 57, pp. 377-382 | ||
| 504 | |a Nudelman, M.A., Rossi, M.S., Conforti, V., Triemer, R.E., Phylogeny of Euglenophyceae based on small subunit rDNA sequences: taxonomic implications (2003) J. Phycol., 39, pp. 226-235 | ||
| 504 | |a Ohlrogge, J.B., Regulation of fatty acid synthesis (1997) Annu. Rev. Plant Physiol. Plant Mol. Biol., 48, pp. 109-136 | ||
| 504 | |a Parkinson, J., Guiliano, D.B., Blaxter, M., Making sense of EST sequences by CLOBBing them (2002) BMC Bioinformatics, 3, p. 31 | ||
| 504 | |a Ramdas, L., Sources of nonlinearity in cDNA microarrays expression measurements (2001) Genome Biol., 2. , (research 0047. 1-0047.7) | ||
| 504 | |a Rocchetta, I., Ruiz, L.B., Magaz, G., Conforti, V.T., Effects of hexavalent Chromium in two strains of Euglena gracilis (2003) Bull. Environ. Contam. Toxicol., 70 (5), pp. 1045-1051 | ||
| 504 | |a Romano, P., Horton, P., Gray, J.E., The Arabidopsis cyclophilin gene family (2004) Plant Physiol., 134 (4), pp. 1268-1282 | ||
| 504 | |a Rosenberg, A., Light-independent stoichiometry of galactosyl diglyceride and chlorophyll accretion during light-induced chloroplast membrane synthesis in Euglena (1976) Biochem. Biophys. Res. Commun., 73 (4), pp. 972-977 | ||
| 504 | |a Ruiz, L.B., Rocchetta, I., dos Santos Ferreira, V., Conforti, V., Isolation, culture and characterization of a new strain of Euglena gracilis (2004) Phycol. Res., 52, pp. 168-179 | ||
| 504 | |a Russell, A.G., Watanabe, Y., Charette, J.M., Gray, M., Unusual features of fibrillarin cDNA and gene structure in Euglena gracilis: evolutionary conservation of core proteins and structural predictions for methylation-guide box C/D snoRNPs throughout the domain Eucarya (2005) Nucleic Acids Res., 33 (9), pp. 2781-2791 | ||
| 504 | |a Schawalder, S.B., Kabani, M., Howald, I., Choudhury, U., Werner, M., Shore, D., Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh 1 (2004) Nature, 432 (7020), pp. 1058-1061 | ||
| 504 | |a Schiff, J.A., Schwartzbach, S.D., Photocontrol of chloroplast development in Euglena (1982) Physiology, III, pp. 313-352. , The Biology of Euglena, Academic Press | ||
| 504 | |a Schwartzbach, S.D., Schiff, J., Chloroplast and cytoplasmic ribosomes of Euglena: selective binding of dihydrostreptomycin to chloroplast ribosomes (1974) J. Bacteriol., 120 n1, pp. 334-341 | ||
| 504 | |a Triemer, R.E., Phylogeny of the Euglenales based upon combined SSU and LSU rDNA sequence comparisons and description of Discoplastis Gen. Nov. (Euglenophyta) (2006) J. Phycol., 42 (3), pp. 731-740 | ||
| 504 | |a Yasuhira, S., Simpson, L., Phylogenetic affinity of mitochondria of Euglena gracilis and kinetoplastids using cytochrome oxidase I and hsp60 (1997) J. Mol. Evol., 44 (3), pp. 341-347 | ||
| 520 | 3 | |a To better understand Euglena gracilis gene expression under different stress conditions (Chromium, Streptomycin or darkness), we undertook a survey of the E. gracilis transcriptome by cDNA sequencing and microarray analysis. First, we constructed a non-normalized cDNA library from the E. gracilis UTEX strain and sequenced a total of 1000 cDNAs. Six hundred and ten of these ESTs were similar to either Plantae or Protistae genes (e-value < e- 10). Second, microarrays were built by spotting all the ESTs onto mirror slides. Microarray expression analysis indicated that 90 out of those 610 ESTs changed their expression level in response to different stress treatments (p < 0.05). In addition, we detected 10 ESTs that changed expression levels irrespective of the tested stress. These may be considered as part of a larger set of stress-related genes in E. gracilis. Finally, we identified 23 unknown ESTs (U-ESTs) following the expression profiles of these putative stress-related genes suggesting that they could be related to the cellular mechanism of stress response. © 2006 Elsevier B.V. All rights reserved. |l eng | |
| 536 | |a Detalles de la financiación: World Health Organization, 1201/OC-AR 05-6802 | ||
| 536 | |a Detalles de la financiación: Howard Hughes Medical Institute | ||
| 536 | |a Detalles de la financiación: Secretaría de Ciencia y Técnica, Universidad de Buenos Aires, 137, X-624 | ||
| 536 | |a Detalles de la financiación: We thank Mr. Wilson Lew for comments that greatly helped the microarray interpretation and Mr. A. Ghadiri, SymBio Corporation, for the help given during the sequencing of ESTs. We are also indebted to Dr. Hernán Lorenzi, The Institute for Genomic Research, for helpful discussions and critical reading of the manuscript. For the period 2005–2006 MJL is International Professor of a Chaire Internationale de Recherche Blaise Pascal, Fondation Ecole Normale Superieure, Region Ile de France, Paris, France. This work was also supported by (i) World Health Organization, Special Program for Research in Tropical Diseases (TDR), South-South Initiative; (ii) FONCYT-BID 1201/OC-AR 05-6802, SECyT-Buenos Aires, Argentina; (iii) UBACyT grant X-624; (iv) PME n°137, SECyT-Buenos Aires, Argentina. The work of MJL was partially supported by an International Research Scholar grant from the Howard Hughes Medical Institute, Chevy Chase, MD, USA. | ||
| 593 | |a Laboratorio de Biología Molecular de la Enfermedad de Chagas (LaBMECh) INGEBI, National Research Council (CONICET), Centro de Genómica Aplicada (CeGA), Vuelta de Obligado 2490 2P, 1428 Buenos Aires, Argentina | ||
| 593 | |a Laboratorio de Biología Comparada, Protistas Departamento de Biodiversidad y Biología Experimental-DBBE (FCEyN), Universidad de Buenos Aires, Argentina | ||
| 593 | |a University of California Santa Cruz, Ocean Sciences Department, Earth and Marine Sciences Bldg., Santa Cruz, CA 95064, United States | ||
| 593 | |a SymBio Corporation, 1455 Adams Drive, Menlo Park, CA 94025, United States | ||
| 593 | |a lnstitut Cochin, D'epartement Maladies Infectieuses, INSERM U567, Paris F-75014, France | ||
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