Trapping and characterization of a reaction intermediate in carbapenem hydrolysis by B. cereus metallo-β-lactamase

Metallo-β-lactamases hydrolyze most β-lactam antibiotics. The lack of a successful inhibitor for them is related to the previous failure to characterize a reaction intermediate with a clinically useful substrate. Stopped-flow experiments together with rapid freeze-quench EPR and Raman spectroscopies...

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Autor principal: Tioni, M.F
Otros Autores: Llarrull, L.I, Poeylaut-Palena, A.A, Martí, M.A, Saggu, M., Periyannan, G.R, Mata, E.G, Bennett, B., Murgida, D.H, Vila, A.J
Formato: Capítulo de libro
Lenguaje:Inglés
Publicado: 2008
Acceso en línea:Registro en Scopus
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024 7 |2 scopus  |a 2-s2.0-56749177280 
024 7 |2 cas  |a carbapenem, 83200-96-8; imipenem, 64221-86-9; beta-Lactamases, EC 3.5.2.6; Carbapenems; Cobalt, 7440-48-4 
040 |a Scopus  |b spa  |c AR-BaUEN  |d AR-BaUEN 
030 |a JACSA 
100 1 |a Tioni, M.F. 
245 1 0 |a Trapping and characterization of a reaction intermediate in carbapenem hydrolysis by B. cereus metallo-β-lactamase 
260 |c 2008 
270 1 0 |m Vila, A. J.; Instituto de Biología Molecular Y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, S2002LRK Rosario, Argentina; email: vila@ibrgov.ar 
506 |2 openaire  |e Política editorial 
504 |a Fisher, J.F., Meroueh, S.O., Mobashery, S., (2005) Chem. Rev, 105, pp. 395-424 
504 |a Frere, J.M., (1995) Mol. Microbiol, 16, pp. 385-395 
504 |a Perez, F., Endimiani, A., Hujer, K.M., Bonomo, R.A., (2007) Curr. Opin. Pharmacol, 7, pp. 459-469 
504 |a Crowder, M.W., Spencer, J., Vila, A.J., (2006) Acc. Chem. Res, 39, pp. 721-728 
504 |a Walsh, T.R., Toleman, M.A., Poirel, L., Nordmann, P., (2005) Clin. Microbiol. Rev, 18, pp. 306-325 
504 |a Bebrone, C., (2007) Biochem. Pharmacol, 74, pp. 1686-1701 
504 |a Hall, B.G., Salipante, S.J., Barlow, M., (2003) J. Mol. Evol, 57, pp. 249-254 
504 |a Galleni, M., Lamotte-Brasseur, J., Rossolint, G.M., Spencer, J., Dideberg, O., Frere, J.M., (2001) Antimicrob. Agents Chemother, 45 (3), pp. 660-663 
504 |a Hernández Valladares, M., Felici, A., Weber, G., Adolph, H.W., Zeppezauer, M., Rossolini, G.M., Amicosante, G., Galleni, M., (1997) Biochemistry, 36, pp. 11534-11541 
504 |a Sharma, N.P., Hajdin, C., Chandrasekar, S., Bennett, B., Yang, K.W., Crowder, M.W., (2006) Biochemistry, 45, pp. 10729-10738 
504 |a Costello, A.L., Sharma, N.P., Yang, K.W., Crowder, M.W., Tierney, D.L., (2006) Biochemistry, 45, pp. 13650-13658 
504 |a Crawford, P.A., Yang, K.W., Sharma, N., Bennett, B., Crowder, M.W., (2005) Biochemistry, 44, pp. 5168-5176 
504 |a Garau, G., Bebrone, C., Anne, C., Galleni, M., Frere, J.M., Dideberg, O., (2005) J. Mol. Biol, 345, pp. 785-795 
504 |a Felici, A., Amicosante, G., Oratore, A., Strom, R., Ledent, P., Joris, B., Fanuel, L., Frere, J.M., (1993) Biochem. J, 291, pp. 151-155 
504 |a Paul-Soto, R., Bauer, R., Frere, J.M., Galleni, M., Meyer-Klaucke, W., Nolting, H., Rossolini, G.M., Adolph, H.W., (1999) J. Biol. Chem, 274, pp. 13242-13249 
504 |a Paul-Soto, R., Hernandez Valladares, M., Galleni, M., Bauer, R., Zeppezauer, M., Frere, J.M., Adolph, H.W., (1998) FEBS Lett, 438, pp. 137-140 
504 |a Wommer, S., Rival, S., Heinz, U., Galleni, M., Frere, J.M., Franceschini, N., Amicosante, G., Adolph, H.W., (2002) J. Biol. Chem, 277, pp. 24142-24147 
504 |a Orellano, E.G., Girardini, J.E., Cricco, J.A., Ceccarelli, E.A., Vila, A.J., (1998) Biochemistry, 37, pp. 10173-10180 
504 |a Wang, Z., Fast, W., Benkovic, S.J., (1999) Biochemistry, 38, pp. 10013-10023 
504 |a Wang, Z., Fast, W., Benkovic, S.J., (1998) J. Am. Chem. Soc, 120, pp. 10788-10789 
504 |a Spencer, J., Clarke, A.R., Walsh, T.R., (2001) J. Biol. Chem, 276, pp. 33638-33644 
504 |a Ullah, J.H., Walsh, T.R., Taylor, I.A., Emery, D.C., Verma, C.S., Gamblin, S.J., Spencer, J., (1998) J. Mol. Biol, 284, pp. 125-136 
504 |a McManus-Muñoz, S., Crowder, M.W., (1999) Biochemistry, 38, pp. 1547-1553 
504 |a Mercuri, P.S., Garcia-Saez, I., De Vriendt, K., Thamm, I., Devreese, B., van Beeumen, J., Dideberg, O., Galleni, M., (2004) J. Biol. Chem, 279, pp. 33630-33638 
504 |a Garrity, J.D., Bennett, B., Crowder, M.W., (2005) Biochemistry, 44, pp. 1078-1087 
504 |a Moran-Barrio, J., Gonzalez, J.M., Lisa, M.N., Costello, A.L., Peraro, M.D., Carloni, P., Bennett, B., Vila, A.J., (2007) J. Biol. Chem, 282, pp. 18286-18293 
504 |a Nukaga, M., Abe, T., Venkatesan, A.M., Mansour, T.S., Bonomo, R.A., Knox, J.R., (2003) Biochemistry, 42, pp. 13152-13159 
504 |a Beadle, B.M., Shoichet, B.K., (2002) Antimicrob. Agents Chemother, 46, pp. 3978-3980 
504 |a Bertini, I., Luchinat, C., (1985) Adv. Inorg. Biochem, 6, pp. 71-111 
504 |a Periyannan, G.R., Costello, A.L., Tierney, D.L., Yang, K.W., Bennett, B., Crowder, M.W., (2006) Biochemistry, 45, pp. 1313-1320 
504 |a Breece, R.M., Costello, A., Bennett, B., Sigdel, T.K., Matthews, M.L., Tierney, D.L., Crowder, M.W., (2005) J. Biol. Chem, 280, pp. 11074-11081 
504 |a Llarrull, L.I., Tioni, M.F., Kowalski, J., Bennett, B., Vila, A.J., (2007) J. Biol. Chem, 282, pp. 30586-30595 
504 |a Hunt, J.B., Neece, S.H., Ginsburg, A., (1985) Anal. Biochem, 146, pp. 150-157 
504 |a Kuzmic, P., (1996) Anal. Biochem, 237, pp. 260-273 
504 |a de Seny, D., Heinz, U., Wommer, S., Kiefer, M., Meyer-Klaucke, W., Galleni, M., Frere, J.M., Adolph, H.W., (2001) J. Biol. Chem, 276, pp. 45065-45078 
504 |a Frisch, M.J., (2004) Gaussian 03, , Gaussian, Inc, Wallingford, CT 
504 |a Bicknell, R., Schaeffer, A., Waley, S.G., Auld, D.S., (1986) Biochemistry, 25, pp. 7208-7215 
504 |a Totir, M.A., Helfand, M.S., Carey, M.P., Sheri, A., Buynak, J.D., Bonomo, R.A., Carey, P.R., (2007) Biochemistry, 46, pp. 8980-8987 
504 |a Ratcliffe, R.W., Wildonger, K.J., Dimichele, L., Douglas, A.W., Hajdu, R., Goegelman, R.T., Springer, J.P., Hirshfield, J., (1989) J. Org. Chem, 54, pp. 653-660 
504 |a Zafaralla, G., Mobashery, S., (1992) J. Am. Chem. Soc, 114, pp. 1505-1506 
504 |a Taibi, P., Mobashery, S., (1995) J. Am. Chem. Soc, 117, pp. 7600-7605 
504 |a Levine, I.N., (1999) Quantum Chemistry, , 5th ed, Prentice Hall: New York 
504 |a Sulton, D., Pagan-Rodriguez, D., Zhou, X., Liu, Y., Hujer, A.M., Bethel, C.R., Helfand, M.S., Bonomo, R.A., (2005) J. Biol. Chem, 280, pp. 35528-35536 
504 |a Bush, K., (1988) Clin. Microb. Rev, 1, pp. 109-123 
504 |a Imtiaz, U., Billings, E.M., Knox, J.R., Mobashery, S., (1994) Biochemistry, 33, pp. 5728-5738 
504 |a Bounaga, S., Laws, A.P., Galleni, M., Page, M.I., (1998) Biochem. J, 31, pp. 703-711 
504 |a McManus-Munoz, S., Crowder, M.W., (1999) Biochemistry, 38, pp. 1547-1553 
504 |a Spencer, J., Clarke, A.R., Walsh, T.R., (2001) J. Biol. Chem, 276, pp. 33638-33644 
504 |a Xu, D., Xie, D., Guo, H., (2006) J. Biol. Chem, 281, pp. 8740-8747 
504 |a Kumar, A., Periyannan, G.R., Narayanan, B., Kittell, A.W., Kim, J.J., Bennett, B., (2007) Biochem. J, 403, pp. 527-536 
504 |a Gonzalez, J.M., Medrano Martin, F.J., Costello, A.L., Tierney, D.L., Vila, A.J., (2007) J. Mol. Biol, 373, pp. 1141-1156 
504 |a Llarrull, L.I., Fabiane, S.M., Kowalski, J.M., Bennett, B., Sutton, B.J., Vila, A.J., (2007) J. Biol. Chem, 282, pp. 18276-18285 
504 |a Crisp, J., Conners, R., Garrity, J.D., Carenbauer, A.L., Crowder, M.W., Spencer, J., (2007) Biochemistry, 46, pp. 10664-10674 
504 |a Dal Peraro, M., Vila, A.J., Carloni, P., Klein, M.L., (2007) J. Am. Chem. Soc, 129, pp. 2808-2816 
504 |a Llarrull, L.I., Tioni, M.F., Vila, A.J., (2008) J. Am, 130, pp. 15842-15851. , Chem. Soc, preceeding paper in this issue 
520 3 |a Metallo-β-lactamases hydrolyze most β-lactam antibiotics. The lack of a successful inhibitor for them is related to the previous failure to characterize a reaction intermediate with a clinically useful substrate. Stopped-flow experiments together with rapid freeze-quench EPR and Raman spectroscopies were used to characterize the reaction of Co(II)-BcII with imipenem. These studies show that Co(II)-BcII is able to hydrolyze imipenem in both the mono- and dinuclear forms. In contrast to the situation met for penicillin, the species that accumulates during turnover is an enzyme-intermediate adduct in which the β-lactam bond has already been cleaved. This intermediate is a metal-bound anionic species with a novel resonant structure that is stabilized by the metal ion at the DCH or Zn2 site. This species has been characterized based on its spectroscopic features. This represents a novel, previously unforeseen intermediate that is related to the chemical nature of carbapenems, as confirmed by the finding of a similar intermediate for meropenem. Since carbapenems are the only substrates cleaved by B1, B2, and B3 lactamases, identification of this intermediate could be exploited as a first step toward the design of transition-state-based inhibitors for all three classes of metallo-β-lactamases. © 2008 American Chemical Society.  |l eng 
593 |a Instituto de Biología Molecular Y Celular de Rosario (IBR), Biophysics Section, Universidad Nacional de Rosario, S2002LRK Rosario, Argentina 
593 |a Instituto de Química Rosario (IQUIR), Consejo Nacional de Investigaciones Científicas Y Técnicas de Argentina (CONICET), Universidad Nacional de Rosario, Suipacha 531, S2002LRK Rosario, Argentina 
593 |a Departamento de Química Inorgánica, Analítica Y Química Fisica, INQUIMAE-CONICET, Pab. 2, C1428EHA Buenos Aires, Argentina 
593 |a Institut für Chemie, Technische Universität Berlin, Strasse des 17, Juni 135, Sekr. PC14, D10623-Berlin, Germany 
593 |a National Biomedical EPR Center, Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI 53226-0509, United States 
593 |a Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, United States 
593 |a Department of Chemistry, Eastern Illinois University, Charleston, IL 61920, United States 
690 1 0 |a METAL IONS 
690 1 0 |a SUBSTRATES 
690 1 0 |a ANIONIC SPECIES 
690 1 0 |a CARBAPENEMS 
690 1 0 |a CHEMICAL NATURES 
690 1 0 |a DINUCLEAR 
690 1 0 |a LACTAMASE 
690 1 0 |a LACTAMASES 
690 1 0 |a MEROPENEM 
690 1 0 |a RAPID FREEZES 
690 1 0 |a REACTION INTERMEDIATES 
690 1 0 |a RESONANT STRUCTURES 
690 1 0 |a SPECTROSCOPIC FEATURES 
690 1 0 |a ELECTRON SPIN RESONANCE SPECTROSCOPY 
690 1 0 |a CARBAPENEM 
690 1 0 |a CUPRIC ION 
690 1 0 |a IMIPENEM 
690 1 0 |a METAL ION 
690 1 0 |a METALLO BETA LACTAMASE 
690 1 0 |a PENICILLIN DERIVATIVE 
690 1 0 |a ARTICLE 
690 1 0 |a BACILLUS CEREUS 
690 1 0 |a CHEMICAL REACTION 
690 1 0 |a DRUG DESIGN 
690 1 0 |a FREEZING 
690 1 0 |a HYDROLYSIS 
690 1 0 |a NONHUMAN 
690 1 0 |a RAMAN SPECTROMETRY 
690 1 0 |a TURNOVER TIME 
690 1 0 |a BACILLUS CEREUS 
690 1 0 |a BETA-LACTAMASES 
690 1 0 |a CARBAPENEMS 
690 1 0 |a COBALT 
690 1 0 |a ELECTRON SPIN RESONANCE SPECTROSCOPY 
690 1 0 |a HYDROLYSIS 
690 1 0 |a KINETICS 
690 1 0 |a MODELS, BIOLOGICAL 
690 1 0 |a PROTEIN STRUCTURE, TERTIARY 
690 1 0 |a SPECTRUM ANALYSIS, RAMAN 
690 1 0 |a STEREOISOMERISM 
700 1 |a Llarrull, L.I. 
700 1 |a Poeylaut-Palena, A.A. 
700 1 |a Martí, M.A. 
700 1 |a Saggu, M. 
700 1 |a Periyannan, G.R. 
700 1 |a Mata, E.G. 
700 1 |a Bennett, B. 
700 1 |a Murgida, D.H. 
700 1 |a Vila, A.J. 
773 0 |d 2008  |g v. 130  |h pp. 15852-15863  |k n. 47  |p J. Am. Chem. Soc.  |x 00027863  |w (AR-BaUEN)CENRE-19  |t Journal of the American Chemical Society 
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856 4 0 |u https://doi.org/10.1021/ja801169j  |y DOI 
856 4 0 |u https://hdl.handle.net/20.500.12110/paper_00027863_v130_n47_p15852_Tioni  |y Handle 
856 4 0 |u https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00027863_v130_n47_p15852_Tioni  |y Registro en la Biblioteca Digital 
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