COII: A useful tool for inferring phylogenetic relationships among New World monkeys (Primates, Platyrrhini)
In this study we evaluated the performance of the cytochrome c oxidase subunit II (COII) mitochondrial gene as a tool for inferring phylogenetic relationships among platyrrhines. Twenty-nine COII sequences were examined in seven platyrrhine genera (Alouatta, Ateles, Lagothrix, Brachyteles, Cebus, Sa...
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2003
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| LEADER | 14586caa a22011057a 4500 | ||
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| 001 | PAPER-4848 | ||
| 003 | AR-BaUEN | ||
| 005 | 20230518203426.0 | ||
| 008 | 190411s2003 xx ||||fo|||| 00| 0 eng|d | ||
| 024 | 7 | |2 scopus |a 2-s2.0-0042358886 | |
| 040 | |a Scopus |b spa |c AR-BaUEN |d AR-BaUEN | ||
| 030 | |a ZLSCA | ||
| 100 | 1 | |a Ascunce, M.S. | |
| 245 | 1 | 0 | |a COII: A useful tool for inferring phylogenetic relationships among New World monkeys (Primates, Platyrrhini) |
| 260 | |c 2003 | ||
| 270 | 1 | 0 | |m Ascunce, M.S.; University of Florida, Dept. of Anthropology, 1112 Turlington Hall, PO Box 117305, Gainesville, FL 32611-7305, United States; email: msascunce@yahoo.com |
| 506 | |2 openaire |e Política editorial | ||
| 504 | |a Adkins, R.M., Honeycutt, R.L., Evolution of the primate cytochrome c oxidase subunit II gene (1994) Journal of Molecular Evolution, 38, pp. 215-231 | ||
| 504 | |a Ascunce, M.S., Hasson, E., Mudry, M.D., Description of the cytochrome c oxidase subunit II gene in some genera of New World Monkeys (Primates, Platyrrhini) (2002) Genetica, 114, pp. 253-267 | ||
| 504 | |a Ashley, M.V., Vaughn, J.L., Owl monkeys (Aotus) are highly divergent in mitochondrial cytochrome c oxidase (COII) sequences (1995) International Journal of Primatology, 16, pp. 793-806 | ||
| 504 | |a Boinski, S., Cropp, S., Disparate data sets resolve squirrel monkey (Saimiri) taxonomy: Implications for behavioral, ecology and biochemical usage (1999) International Journal of Primatology, 20, pp. 237-256 | ||
| 504 | |a Cao, Y., Adachi, J., Janke, A., Pääbo, S., Hasegawa, M., Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene (1994) Journal of Molecular Evolution, 39, pp. 519-527 | ||
| 504 | |a Collins, A.C., Dubach, J.M., Biogeographic and ecological forces responsible for speciation in Ateles (2000) International Journal of Primatology, 21, pp. 421-444 | ||
| 504 | |a Cummings, M.P., Otto, P., Wakeley, J., Sampling properties of DNA sequence data in phylogenetic analysis (1995) Molecular Biology and Evolution, 12, pp. 814-822 | ||
| 504 | |a Disotell, T.R., Honeycutt, R.L., Ruvolo, M., Mitochondrial DNA phylogeny of the Old-World monkey tribe Papionini (1992) Molecular Biology and Evolution, 9, pp. 1-13 | ||
| 504 | |a Von Dornum, M., Ruvolo, M., Phylogenetic relationships of the New World monkeys (Primates, Platyrrhini) based on nuclear G6PD DNA sequences (1999) Molecular Phylogenetics and Evolution, 11, pp. 459-476 | ||
| 504 | |a Eisengberg, J.F., Habitat economy and society: Some correlations and hypotheses for the Neotropical Primates (1979) Primate Ecology and Human Origins, pp. 215-262. , I. S. Bernstein & E. O. Smith (Eds). New York: Garland STPM | ||
| 504 | |a Engel, S.R., Hogan, K.M., Taylor, J.F., Davis, S.D., Molecular systematics and paleobiogeography of the South American sigmodontine rodents (1998) Molecular Biology and Evolution, 15, pp. 35-49 | ||
| 504 | |a Felsenstein, J., Cases in which parsimony or compatibility methods will be positively misleading (1978) Systematic Zoology, 27, pp. 401-410 | ||
| 504 | |a Felsenstein, J., Confidence limits on phylogeny: An approach using the bootstrap (1985) Evolution, 39, pp. 783-791 | ||
| 504 | |a Figueiredo, W.B., Carvalho-Filho, N.M., Schneider, H., Sampaio, I., Mitochondrial DNA sequences and the taxonomic status of Alouatta seniculus populations in northeastern Amazonia (1998) Neotropical Primates, 6, pp. 73-77 | ||
| 504 | |a Fleagle, J.G., (1998) Primate Adaptation and Evolution, , San Diego, CA: Academic Press | ||
| 504 | |a Ford, S., Systematics of the New World monkeys (1986) Comparative Primate Biology, Vol. 1: Systematics, Evolution and Anatomy, 1, pp. 73-135. , D. R. Swindler & J. Erwin (Eds). New York: Alan R. Liss | ||
| 504 | |a Graur, D., Li, W.H., Genes, genetic codes, and mutation (2000) Fundamentals of Molecular Evolution, pp. 5-38. , A. D. Sinauer (Ed.). Sunderland, MA: Sinauer Associates Inc | ||
| 504 | |a Graybeal, A., The phylogenetic utility of cytochrome b: Lessons from bufoid frogs (1993) Molecular Phylogenetics and Evolution, 2, pp. 256-269 | ||
| 504 | |a Harada, M.L., Schneider, H., Schneider, M.P.C., Sampaio, I., Czelusniak, J., Goodman, M., DNA evidence on the phylogenetic systematics of New World monkeys: Support for the sister-grouping of Cebus and Saimiri from two unlinked nuclear genes (1995) Molecular Phylogenetics and Evolution, 4, pp. 331-349 | ||
| 504 | |a Hershkovitz, P., Mammals of Northern Colombia. Preliminary report, 4 (Primates) with taxonomic revisions of some forms (1949) Proceedings of the United States Natural Museum, 98, pp. 323-427 | ||
| 504 | |a Hershkovitz, P., Taxonomy of squirrel monkeys genus Saimiri (Cebidae: Platyrrhini): A preliminary report with description of a hitherto unnamed form (1984) American Journal of Primatology, 7, pp. 155-210 | ||
| 504 | |a Hill, W.C.O., (1960) Primates: Comparative Anatomy and Taxonomy, Vol. 4. Cebidae, 4 (PART A). , Edinburgh: Edinburgh University Press | ||
| 504 | |a Hill, W.C.O., (1962) Primates: Comparative Anatomy and Taxonomy, Vol. 5. Cebidae, 5 (PART B). , Edinburgh: Edinburgh University Press | ||
| 504 | |a Hillis, D.M., Dixon, M.T., Vertebrate phylogeny: Evidence from 28S ribosomal DNA sequences (1989) The Hierarchy of Life: Molecules and Morphology in Phylogenetic Analysis, pp. 355-367. , B. Fernholm, K. Bremer & H. Jörnvall (Eds). Amsterdam: Elsevier | ||
| 504 | |a Hillis, D.M., Huelsenbeck, J.P., Signal, noise, and reliability in molecular phylogenetic analyses (1992) Journal of Heredity, 83, pp. 189-195 | ||
| 504 | |a Horovitz, I., Zardoya, R., Meyer, A., Platyrrhine systematics: A simultaneous analysis of molecular and morphological data (1998) American Journal of Physical Anthropology, 106, pp. 261-281 | ||
| 504 | |a Kay, R.F., The phyletic relationships of extant and fossil Pitheciinae (Platyrrhini, Anthropoidea) (1990) Journal of Human Evolution, 19, pp. 175-208 | ||
| 504 | |a Kimura, M., A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences (1980) Journal of Molecular Evolution, 16, pp. 111-120 | ||
| 504 | |a Kinzey, W., Distribution of some neotropical primates and the model of Pleistocene forest refugia (1980) Proceedings of the Vth International Symposium Association of Tropical Biology, , New York: Columbia University Press | ||
| 504 | |a Kumar, S., Tamura, K., Jakobsen, I.B., Nei, M., MEGA 2 - Molecular evolutionary genetics analysis, version 2. [Computer software] (2001) Bioinformatics, 17, pp. 1244-1245 | ||
| 504 | |a Lockhart, P.J., Steel, M.A., Hendy, M.D., Penny, D., Recovering evolutionary trees under a more realistic model of sequences evolution (1994) Molecular Biology and Evolution, 11, pp. 605-612 | ||
| 504 | |a Meireles, C.M., Czelusniak, J., Schneider, M.P.C., Muniz, J.A.P.C., Brigido, M.C., Ferreira, H.S., Goodman, M., Molecular phylogeny of ateline New World monkeys (Platyrrhini, Atelinae) based on γ-globin gene sequences: Evidence that Brachyteles is the sister group of Lagothrix (1999) Molecular Phylogenetics and Evolution, 12, pp. 10-30 | ||
| 504 | |a Meireles, C.M., Czelusniak, J., Ferrari, S.F., Schneider, M.P.C., Goodman, M., Phylogenetic relationships among brazilian howler monkeys, genus Alouatta (Platyrrhini, Atelidae), based on γ1-globin pseudogene sequences (1999) Genetics and Molecular Biology, 22, pp. 337-344 | ||
| 504 | |a Meyer, A., Shortcomings of the cytochrome b gene as a molecular marker (1994) Trends in Ecology and Evolution, 9, pp. 278-280 | ||
| 504 | |a Miyamoto, M.M., Boyle, S.M., The potential importance of mitochondrial DNA sequence data to eutherian mammal phylogeny (1989) The Hierarchy of Life: Molecules and Morphology in Phylogenetic Analysis, pp. 437-450. , B. Fernholm, K. Bremer & H. Jörnvall (Eds). Elsevier: Amsterdan | ||
| 504 | |a Mudry, M.D., Cytogenetic variability within and across populations of Cebus apella in Argentina (1990) Folia Primatologica, 54, pp. 206-216 | ||
| 504 | |a Napier, J.S., Napier, P.H., (1967) A Handbook of Living Primates, , London: Academic Press | ||
| 504 | |a Patton, J.L., Smith, M.F., mtDNA phylogeny of Andean mice: A test of diversification across ecological gradients (1992) Evolution, 46, pp. 174-183 | ||
| 504 | |a Peres, C.A.J.L., Patton, Da Silva, M.N.F., Riverine barriers and gene flow in Amazonian saddle-back tamarins (1996) Folia Primatologica, 67, pp. 113-124 | ||
| 504 | |a Ponsà, M., García, M., Borell, A., García, F., Egozcue, J., Gorostiaga, M.A., Delprat, A., Mudry, M., Heterochromatin and cytogenetic polymorphisms in Cebus apella (Cebidae, Platyrrhini) (1995) American Journal of Primatology, 37, pp. 325-331 | ||
| 504 | |a Rosenberger, A.L., Systematics: The higher taxa (1981) Ecology and Behavior of the Neotropical Primates, Vol. 1, 1, pp. 9-27. , A. F. Coimbra-Filho & R. A. Mittermeier (Eds). Rio de Janeiro: Brazilian Academy of Science | ||
| 504 | |a Ruvolo, M., Disotell, T.R., Allard, M.W., Brown, W.M., Honeycutt, R.L., Resolution of the African hominoid trichotomy by use of a mitochondrial gene sequence (1991) Proceedings of the National Academic of Sciences, USA, 88, pp. 1570-1574 | ||
| 504 | |a Ruvolo, M., Zehr, S., Von Dormun, M., Pan, D.B., Chang, Lin, J., Mitochondrial COII sequences and modern human origins (1993) Molecular Biology and Evolution, 10, pp. 1115-1135 | ||
| 504 | |a Rylands, A.B., Schneider, H., Langguth, A., Mittermeier, R.A., Groves, C.P., Rodríguez-Luna, E., An assessment of the diversity of New World Primates (2000) Neotropical Primates, 8 (2), pp. 61-93 | ||
| 504 | |a Rzhetsky, A., Nei, M., A simple method for estimating and testing minimum evolution trees (1992) Molecular Biology and Evolution, 9, pp. 945-967 | ||
| 504 | |a Saitou, N., Nei, M., The neighbor-joining method: A new method for reconstructing phylogenetic trees (1987) Molecular Biology and Evolution, 4, pp. 406-425 | ||
| 504 | |a Schneider, H., The current stares of the New World Monkey Phylogeny (2000) Annals of Academia Brasileira de Ciencias, 72, pp. 165-172 | ||
| 504 | |a Schneider, H., Sampaio, I., Harada, M.L., Barroso, C.M.L., Schneider, M.P.C., Czelusniak, J., Goodman, M., Molecular phylogeny of the New World Monkeys (Platyrrhini, Primates) based on two unlinked nuclear genes: IRBP intron1 and ε-globin sequences (1996) American Journal of Physical Anthropology, 100, pp. 153-179 | ||
| 504 | |a Schneider, H., Schneider, M.P.C., Sampaio, I., Harada, M.L., Stanhope, M., Czelusniak, J., Goodman, M., Molecular phylogeny of the New World Monkeys (Platyrrhini, Primates) (1993) Molecular Phylogenetics and Evolution, 2, pp. 225-242 | ||
| 504 | |a Simon, C., Frati, F., Beckenbach, A.T., Crespi, B., Liu, H., Flook, P., Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers (1994) Annals of the Entomological Society of America, 87, pp. 651-701 | ||
| 504 | |a Swofford, D.L., (1998) PAUP* - Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. B8. [Computer Software and Manual], , Sunderland, MA: Sinauer Associates Inc | ||
| 504 | |a Tagliaro, C.H., Schneider, M.P.C., Schneider, H., Sampaio, I.C., Stanhope, M.J., Marmoset phylogenetics, conservation perspectives, and evolution of mtDNA control region (1997) Molecular Biology and Evolution, 14, pp. 674-684 | ||
| 504 | |a Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools (1997) Nucleic Acids Research, 24, pp. 4876-4882 | ||
| 504 | |a Walsh, P.S., Metzger, D.A., Higuchi, R., Chelex® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material (1991) Bio Technique, 10, pp. 506-513 | ||
| 504 | |a Zardoya, R., Meyer, A., Phylogenetic performance of the mitochondrial protein-coding genes in resolving relationships among vertebrates (1996) Molecular Biology and Evolution, 13, pp. 933-942 | ||
| 520 | 3 | |a In this study we evaluated the performance of the cytochrome c oxidase subunit II (COII) mitochondrial gene as a tool for inferring phylogenetic relationships among platyrrhines. Twenty-nine COII sequences were examined in seven platyrrhine genera (Alouatta, Ateles, Lagothrix, Brachyteles, Cebus, Saimiri, and Aotus) employing parsimony and distance methods. Phylogenetic signal (g1) was present in all codon positions, despite the transitional saturation detected at the third position. In tree reconstructions bootstrap support values decreased abruptly above the generic level. Parsimony trees based on weighted transversions (tv:ts, 10:1) at the third position showed similar topologies. The utility of COII in phylogenetic studies among platyrrhines seems to be limited, due to its low rate of replacement substitutions and a relatively fast saturation of silent substitutions at third codon positions. Our data suggest that its main utility in platyrrhine systematics lies at the intrageneric level. |l eng | |
| 593 | |a Depto. de Ciencias Biológicas, Fac. de Ciencias Exactas y Naturales, Pabellón II, 4to. Piso Laboratory: 96, (C1428EHA) Ciudad de Buenos Aires, Argentina | ||
| 593 | |a University of Florida, Dept. of Anthropology, 1112 Turlington Hall, PO Box 117305, Gainesville, FL 32611-7305, United States | ||
| 690 | 1 | 0 | |a ALOUATTA |
| 690 | 1 | 0 | |a ATELES |
| 690 | 1 | 0 | |a BRACHYTELES |
| 690 | 1 | 0 | |a CEBIDAE |
| 690 | 1 | 0 | |a CEBUS |
| 690 | 1 | 0 | |a LAGOTHRIX |
| 690 | 1 | 0 | |a MAMMALIA |
| 690 | 1 | 0 | |a PLATYRRHINI |
| 690 | 1 | 0 | |a SAIMIRI |
| 650 | 1 | 7 | |2 spines |a PRIMATES |
| 700 | 1 | |a Hasson, E. | |
| 700 | 1 | |a Mudry, M.D. | |
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