Identification and characterisation of the α and β subunits of succinyl CoA ligase of tomato

Despite the central importance of the TCA cycle in plant metabolism not all of the genes encoding its constituent enzymes have been functionally identified. In yeast, the heterodimeric protein succinyl CoA ligase is encoded for by two single-copy genes. Here we report the isolation of two tomato cDN...

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Autor principal: Studart-Guimarães, C.
Otros Autores: Gibon, Y., Frankel, N., Wood, C.C, Zanor, M.I, Fernie, A.R, Carrari, F.
Formato: Capítulo de libro
Lenguaje:Inglés
Publicado: 2005
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024 7 |2 cas  |a succinic acid, 110-15-6; succinyl coenzyme A synthetase, 37341-57-4, 9014-36-2, 9080-33-5; Protein Subunits; Succinate-CoA Ligases, EC 6.2.1.-; Succinic Acid, 110-15-6 
040 |a Scopus  |b spa  |c AR-BaUEN  |d AR-BaUEN 
030 |a PMBID 
100 1 |a Studart-Guimarães, C. 
245 1 0 |a Identification and characterisation of the α and β subunits of succinyl CoA ligase of tomato 
260 |c 2005 
270 1 0 |m Fernie, A.R.; Max-Planck Institute for Molecular Plant Physiology, Am Mühlenberg 1, 14476 Golm, Germany; email: fernie@mpimp-golm.mpg.de 
506 |2 openaire  |e Política editorial 
504 |a Bendtsen, J.D., Nielsen, H., Von Heijne, G., Brunak, Improved prediction of signal peptides: SignalP 3.0 (2004) J. Mol. Biol., 340, pp. 783-795 
504 |a Bender-Machado Bäuerlein, L.M., Carrari, F., Schauer, N., Lytovchenko, A., Gibon, Y., Kelly, A.A., Ehlers Loureiro, M., Fernie, A.R., Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis (2004) Plant Mol. Biol., 55, pp. 645-662 
504 |a Carrari, F., Coll-García, D., Schauer, N., Lytovchenko, A., Palacios-Rojas, N., Balbo, I., Rosso And Fernie, M.A.R., Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth (2005) Plant Physiol., 137, pp. 70-82 
504 |a Carrari, F., Nunes-Nesi, A., Gibon, Y., Lytovchenko, A., Loureiro, M.E., Fernie, A.R., Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato (2003) Plant Physiol., 133, pp. 1322-1335 
504 |a Drager, D.B., Debrosses-Fonrouge, A.G., Krach, C., Chardonnens, A.N., Meyer, R.C., Saumitou-Laprade, P., Kramer, U., Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels (2004) Plant J., 39, pp. 425-439 
504 |a Emanuelsson, O., Nielsen, H., Brunak, S., Von Heijne, G., Predicting subcellular localization of proteins based on their N-terminal amino acid sequence (2000) J. Mol. Biol., 300, pp. 1005-1016 
504 |a Eshed, Y., Zamir, D., A genomic library of Lycopersicon pennellii in L. esculentum: A tool for fine mapping of genes (1994) Euphytica, 79, pp. 175-179 
504 |a Fernie, A.R., Carrari, F., Sweetlove, L., Respiratory metabolism: Glycolysis, the TCA cycle and mitochondrial electron transport chain (2004) Curr. Opin. Plant Biol., 7, pp. 254-261 
504 |a Fraser, M.E., James, M.N.G., Bridger, W.A., Wolodko, W.T., A detailed structural description of Escherichia coli succinyl-CoA synthetase (1999) J. Mol. Biol., 285, pp. 1633-1653 
504 |a Gibon, Y., Blaesing, O.E., Hannemann, J., Carillo, P., Höhne, M., Hendricks, J.H.M., Palacios, N., Stitt, M., A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness (2004) Plant Cell, 16, pp. 3304-3325 
504 |a Gibon, Y., Vigeolas, H., Tiessen, A., Geigenberger, P., Stitt, M., Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel cycling system (2002) Plant J., 30, pp. 221-235 
504 |a Johnson, J.D., Mehus, J.G., Tews, K., Milavetz, B.I., Lambeth, D.O., Genetic evidence for the expression of ATP- and GTP-specific succinyl-CoA synthetase in multicellular eucaryotes (1998) J. Biol. Chem., 273, pp. 27580-27586 
504 |a Karimi, M., Inze, D., Depicker, A., GATEWAY vectors for Agrobacterium-mediated plant transformation (2002) Trends Plant Sci., 7, pp. 193-195 
504 |a Kaufman, S., Alivisatos, S.G.A., Purification and properties of the phosphorylating enzyme from spinach (1955) J. Biol. Chem., 216, pp. 141-152 
504 |a Kumar, S., Tamura, K., Jakobsen, I.B., Nei, M., MEGA2: Molecular evolutionary genetics analysis software (2001) Bioinformatics, 17, pp. 1244-1245 
504 |a Lambeth, D.O., Tews, K.N., Adkins, S., Frohlich, D., Milavetz, I., Expression of two Succinyl-CoA synthetases with different nucleotide specificities in mammalian tissues (2004) J. Biol. Chem., 279, pp. 36621-36624 
504 |a Millar, A.H., Leaver, C.J., The cytotoxic lipid peroxidation product, 4-hydroxy-2-nonenal, specifically inhibits decarboxylating dehydrogenases in the matrix of plant mitochondria (2000) FEBS Lett., 481, pp. 117-121 
504 |a Millar, A.H., Sweetlove, L.J., Giegé, P., Leaver, C., Analysis of the Arabidopsis mitochondrial proteome (2001) Plant Physiol., 127, pp. 1711-1727 
504 |a Nunes-Nesi, A., Carrari, F., Lytovchenko, A., Smith, A.M.O., Loureiro, M.E., Ratcliffe, R.G., Sweetlove, L., Fernie, A.R., Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial Malate dehydrogenase activity in transgenic tomato plants (2005) Plant Physiol., 137, pp. 611-622 
504 |a Obiadalla-Ali, H., Fernie, A.R., Kossmann, J., Lloyd, J.R., Developmental analysis of carbohydrate metabolism in tomato (Lycopersicon esculentum cv. Micro-Tom) fruits (2004) Physiol. Plant, 120, pp. 196-204 
504 |a Palmer, J.M., Wedding, R.T., Purification and properties of succinyl-CoA synthetase from jerusalem artichoke mitochondria (1966) Biochim. et Biophys. Acta, 113, pp. 167-174 
504 |a Przybyla-Zawislak, B., Dennis, R.A., Zakharkin, S.O., McCammon, M.T., Genes of succinyl-CoA ligase from Saccharomyces cerevisiae (1998) Eur. J. Biochem., 258, pp. 736-743 
504 |a Ryan, D.G., Lin, T., Brownie, E., Bridger, W.A., Wolodko, W.T., Mutually exclusive splicing generates two distinct isoforms of pig heart succinyl-CoA synthetase (1997) J. Biol. Chem., 272, pp. 21151-21159 
504 |a Saitou, N., Nei, M., The neighbor-joining method: A new method for reconstructing phylogenetic trees (1987) Mol. Biol. Evol., 4, pp. 406-425 
504 |a Sambrook, J., Fritsch, E.F., Maniatis, T., Ford, N., Nolan, C., Ferguson, M., Extraction, purification, and analysis of messenger RNA from eukaryotic cells (1989) Molecular Cloning: A Laboratory Manual, pp. 73-783. , Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY 
504 |a Schauer, N., Zamir, D., Fernie, A.R., Metabolic profiling of leaves and fruits of wild species tomato: A survey of the Solanum lycopersicon complex (2005) J. Exp. Bot., 56, pp. 297-307 
504 |a Schiestl, R.H., Gietz, R.D., High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier (1989) Curr. Genet., 16, pp. 339-346 
504 |a Small, I., Peeters, N., Legeai, F., Lurin, C., Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences (2004) Proteomics, 4, pp. 1581-1590 
504 |a Steinhauser, D., Usadel, B., Luedemann, A., Thimm, O., Kopka, J., CSB.DB: A comprehensive systems-biology database (2004) Bioinformatics, 20, pp. 3647-3651 
504 |a Sweetlove, L.J., Heazelwood, J.L., Herald, V., Holtzapffel, R., Day, D.A., Leaver, C.J., Millar, A.H., The impact of oxidative stress on Arabidopsis mitochondria (2002) Plant J., 32, pp. 891-904 
504 |a Urbanczyk-Wochniak, E., Luedemann, A., Kopka, J., Selbig, J., Roessner-Tunali, U., Willmitzer, L., Fernie, A.R., Parallel analysis of a transcript and metabolic profiles: A new approach in systems biology (2003) EMBO Reports, 4, pp. 989-993 
504 |a Van Der Hoeven, R., Ronning, C., Giovannoni, J., Martin, G., Tanksley, S., Deductions about the number, organization and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing (2003) Plant Cell, 14, pp. 1441-1456 
504 |a Wider, E.A., Tigier, H.A., Porphyrin biosynthesis in soybean callus tissue. VIII. Isolation, purification and general properties of Succinyl CoA synthetase (1971) Enzymologia, 41, pp. 217-231 
504 |a Wolodko, W.T., Fraser, M.E., James, M.N.G., Bridger, W.A., The crystal structure of succinyl-CoA synthetase from Escherichia coli at 2.5-A resolution (1994) J. Biol. Chem., 269, pp. 10883-10894 
504 |a Zimmermann, P., Hirsch-Hoffmann, M., Hennig, L., Gruissem, W., GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox (2004) Plant Physiol., 136, pp. 2621-2632 
520 3 |a Despite the central importance of the TCA cycle in plant metabolism not all of the genes encoding its constituent enzymes have been functionally identified. In yeast, the heterodimeric protein succinyl CoA ligase is encoded for by two single-copy genes. Here we report the isolation of two tomato cDNAs coding for α- and one coding for the β-subunit of succinyl CoA ligase. These three cDNAs were used to complement the respective Saccharomyces cerevisiae mutants deficient in the α- and β-subunit, demonstrating that they encode functionally active polypeptides. The genes encoding for the subunits were expressed in all tissues, but most strongly in floral and leaf tissues, with equivalent expression of the two α-subunit genes being expressed to equivalent levels in all tissues. In all instances GFP fusion expression studies confirmed an expected mitochondrial location of the proteins encoded. Following the development of a novel assay to measure succinyl CoA ligase activity, in the direction of succinate formation, the evaluation of the maximal catalytic activities of the enzyme in a range of tissues revealed that these paralleled those of mRNA levels. We also utilized this assay to perform a preliminary characterisation of the regulatory properties of the enzyme suggesting allosteric control of this enzyme which may regulate flux through the TCA cycle in a manner consistent with its position therein. © Springer 2005.  |l eng 
536 |a Detalles de la financiación: We thank Lothar Willmitzer and members of AG Kramer for support and discussion during the course of this work and would like to acknowledge the financial support of the KAS (Konrad Adenauer Stiftung) to CSG. We thank Amit Gur and Dani Zamir (Hebrew University of Jerusalem, Rehovot, Israel) for the information concerning the map position of the genes described in this report and Joachim Selbig (same institute) for help with protein structure predictions. FC is member of conicet. 
593 |a Max-Planck Institute for Molecular Plant Physiology, Am Mühlenberg 1, 14476 Golm, Germany 
593 |a Laboratorio de Fisiología Y Biología Molecular, Facultad de Ciencias Exactas Y Naturales, Universidad de Buenos Aires, Argentina 
593 |a CSIRO-Plant Industry, P.O. Box 2601, Canberra, ACT, Australia 
593 |a CICV-INTA, Instituto de Biotecnología, Las Cabañas y Los Reseros, B1712 WAA, Buenos Aires, Argentina 
690 1 0 |a MITOCHONDRIAL METABOLISM 
690 1 0 |a SACCHAROMYCES CEREVISIAE 
690 1 0 |a SOLANUM LYCOPERSICUM 
690 1 0 |a SUCCINYL COA LIGASE 
690 1 0 |a TRICARBOXYLIC ACID CYCLE 
690 1 0 |a CROPS 
690 1 0 |a CYTOLOGY 
690 1 0 |a ENZYMES 
690 1 0 |a GENETIC ENGINEERING 
690 1 0 |a METABOLISM 
690 1 0 |a YEAST 
690 1 0 |a MITOCHONDRIAL METABOLISM 
690 1 0 |a SOLANUM LICOPERSICUM 
690 1 0 |a SUCCINYL COA LIGASE 
690 1 0 |a TRICARBOXYLIC ACID CYCLE 
690 1 0 |a ENZYME KINETICS 
690 1 0 |a PROTEIN SUBUNIT 
690 1 0 |a SUCCINIC ACID 
690 1 0 |a SUCCINYL COENZYME A SYNTHETASE 
690 1 0 |a AMINO ACID SEQUENCE 
690 1 0 |a ARTICLE 
690 1 0 |a CHEMISTRY 
690 1 0 |a CYTOLOGY 
690 1 0 |a DNA SEQUENCE 
690 1 0 |a ENZYMOLOGY 
690 1 0 |a GENE EXPRESSION REGULATION 
690 1 0 |a GENETIC COMPLEMENTATION 
690 1 0 |a GENETICS 
690 1 0 |a METABOLISM 
690 1 0 |a MOLECULAR CLONING 
690 1 0 |a PHYLOGENY 
690 1 0 |a PROTEIN TERTIARY STRUCTURE 
690 1 0 |a PROTEIN TRANSPORT 
690 1 0 |a SEQUENCE HOMOLOGY 
690 1 0 |a TOMATO 
690 1 0 |a AMINO ACID SEQUENCE 
690 1 0 |a CLONING, MOLECULAR 
690 1 0 |a GENE EXPRESSION REGULATION, ENZYMOLOGIC 
690 1 0 |a GENE EXPRESSION REGULATION, PLANT 
690 1 0 |a GENETIC COMPLEMENTATION TEST 
690 1 0 |a LYCOPERSICON ESCULENTUM 
690 1 0 |a PHYLOGENY 
690 1 0 |a PROTEIN STRUCTURE, TERTIARY 
690 1 0 |a PROTEIN SUBUNITS 
690 1 0 |a PROTEIN TRANSPORT 
690 1 0 |a SEQUENCE ANALYSIS, DNA 
690 1 0 |a SEQUENCE HOMOLOGY, AMINO ACID 
690 1 0 |a SUCCINATE-COA LIGASES 
690 1 0 |a SUCCINIC ACID 
690 1 0 |a CYTOLOGY 
690 1 0 |a ENZYMATIC ACTIVITY 
690 1 0 |a ENZYMES 
690 1 0 |a GENETIC ENGINEERING 
690 1 0 |a METABOLISM 
690 1 0 |a SACCHAROMYCES CEREVISIAE 
690 1 0 |a TOMATOES 
690 1 0 |a LYCOPERSICON ESCULENTUM 
690 1 0 |a SACCHAROMYCES CEREVISIAE 
690 1 0 |a SOLANUM 
650 1 7 |2 spines  |a GENES 
650 1 7 |2 spines  |a GENES 
700 1 |a Gibon, Y. 
700 1 |a Frankel, N. 
700 1 |a Wood, C.C. 
700 1 |a Zanor, M.I. 
700 1 |a Fernie, A.R. 
700 1 |a Carrari, F. 
773 0 |d 2005  |g v. 59  |h pp. 781-791  |k n. 5  |p Plant. Mol. Biol.  |x 01674412  |w (AR-BaUEN)CENRE-3503  |t Plant Molecular Biology 
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856 4 0 |u https://hdl.handle.net/20.500.12110/paper_01674412_v59_n5_p781_StudartGuimaraes  |y Handle 
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