Sequence evolution of the major satellite DNA of the genus Ctenomys (Octodontidae, Rodentia)
Sequence variability of RPCS (repetitive PuvII Ctenomys sequence), the major satellite DNA of octodontid Ctenomys rodents, was analysed in species belonging to three groups of species representing the two patterns of karyotypic evolution in the genus: stable and dynamic karyotypes among closely rela...
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2007
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| LEADER | 13689caa a22012977a 4500 | ||
|---|---|---|---|
| 001 | PAPER-22668 | ||
| 003 | AR-BaUEN | ||
| 005 | 20230518205415.0 | ||
| 008 | 190411s2007 xx ||||fo|||| 00| 0 eng|d | ||
| 024 | 7 | |2 scopus |a 2-s2.0-33947714794 | |
| 024 | 7 | |2 Molecular Sequence Numbers |a GENBANK: DQ444617, DQ444618, DQ444619, DQ444620, DQ444621, DQ444622, DQ444623, DQ444624, DQ444625, DQ444626, DQ444627, DQ444628, DQ444629, DQ444630, DQ444631, DQ444632, DQ444633, DQ444634, DQ444635, DQ444636, DQ444637, DQ444638, DQ444639, DQ444640, DQ444641, DQ444642, DQ444643, DQ444644, DQ444645, DQ444646, DQ444647, DQ444648, DQ444649, DQ444650, DQ444651, DQ444652, DQ459094, DQ459095, DQ459096, DQ459097, DQ459098, DQ459099, DQ459100, DQ459101, DQ459102, DQ459103, DQ459104, DQ459105, DQ459106, DQ459107, DQ459108, DQ459109, DQ459110, DQ459111, DQ459112, DQ459113, DQ459114, DQ459115, DQ459116, DQ459117, DQ459118, DQ459119, EF156365; | |
| 024 | 7 | |2 cas |a Deoxyribonucleases, Type II Site-Specific, EC 3.1.21.4; DNA, Satellite; endodeoxyribonuclease PvuII, EC 3.1.21.- | |
| 040 | |a Scopus |b spa |c AR-BaUEN |d AR-BaUEN | ||
| 030 | |a GENED | ||
| 100 | 1 | |a Ellingsen, A. | |
| 245 | 1 | 0 | |a Sequence evolution of the major satellite DNA of the genus Ctenomys (Octodontidae, Rodentia) |
| 260 | |c 2007 | ||
| 270 | 1 | 0 | |m Rossi, M.S.; IFIBYNE, CONICET, Laboratorio de Fisiología y Biología Molecular, Pabellón II, EHA1428, Buenos Aires, Argentina; email: srossi@fbmc.fcen.uba.ar |
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| 520 | 3 | |a Sequence variability of RPCS (repetitive PuvII Ctenomys sequence), the major satellite DNA of octodontid Ctenomys rodents, was analysed in species belonging to three groups of species representing the two patterns of karyotypic evolution in the genus: stable and dynamic karyotypes among closely related species. The studied species represent the overall range of RPCS copy number (2000-6.6 × 106 copies per haploid genome) in the genus. RPCS sequence was characterised by PCR amplification of the genomic consensus sequence and cloned monomers. Our results suggest that RPCS genomic consensus sequence variability correlates with RPCS copy number stability and karyotypic stastis, but not with high or low RPCS copy number values. In contrast, the RPCS gcs shows a mutational profile that is similar across all analysed species. Our data suggest that an RPCS ancestral library of variants was maintained through the cladogenesis of the genus. There is also evidence pointing to the simultaneous contribution of processes of concerted evolution that resulted in a reduced representation of some ancestral variants and their partial replacement for new ones. In addition, analysis of distribution of the variability along the monomer suggests that subsequences of the RPCS are subject to some degree of constraint, probably driven by the recent replicative activity of RPCS in species with high copy number. © 2007 Elsevier B.V. All rights reserved. |l eng | |
| 536 | |a Detalles de la financiación: Universidad de Buenos Aires | ||
| 536 | |a Detalles de la financiación: African University of Science and Technology | ||
| 536 | |a Detalles de la financiación: Consejo Nacional de Investigaciones Científicas y Técnicas | ||
| 536 | |a Detalles de la financiación: Consejo Nacional de Investigaciones Científicas y Técnicas | ||
| 536 | |a Detalles de la financiación: This work was supported by grants from the University of Buenos Aires and Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina (CONICET), awarded to M.S.R. DNA sequencing was partially supported by a Sigma Xi Grant in Aid to C.H.S. A.E. carried out the present work as part of his Master's degree at the University of Science and Technology of Trondheim, Norway. C.H.S. was supported by a doctoral fellowship awarded by CONICET. M. S. R. is a career investigator of the CONICET. We would like to thank two anonymous reviewers for helpful comments on the manuscript. | ||
| 593 | |a IFIBYNE, CONICET, Laboratorio de Fisiología y Biología Molecular, Pabellón II, EHA1428, Buenos Aires, Argentina | ||
| 690 | 1 | 0 | |a CONCERTED EVOLUTION |
| 690 | 1 | 0 | |a CTENOMYS |
| 690 | 1 | 0 | |a SATELLITE DNA |
| 690 | 1 | 0 | |a SATELLITE DNA |
| 690 | 1 | 0 | |a ANIMAL TISSUE |
| 690 | 1 | 0 | |a ARTICLE |
| 690 | 1 | 0 | |a CLADOGENESIS |
| 690 | 1 | 0 | |a CONTROLLED STUDY |
| 690 | 1 | 0 | |a CORRELATION ANALYSIS |
| 690 | 1 | 0 | |a DNA SEQUENCE |
| 690 | 1 | 0 | |a GENE AMPLIFICATION |
| 690 | 1 | 0 | |a GENE NUMBER |
| 690 | 1 | 0 | |a GENE REPLICATION |
| 690 | 1 | 0 | |a GENETIC STABILITY |
| 690 | 1 | 0 | |a GENOME |
| 690 | 1 | 0 | |a KARYOTYPING |
| 690 | 1 | 0 | |a MOLECULAR CLONING |
| 690 | 1 | 0 | |a NONHUMAN |
| 690 | 1 | 0 | |a NUCLEOTIDE SEQUENCE |
| 690 | 1 | 0 | |a POLYMERASE CHAIN REACTION |
| 690 | 1 | 0 | |a PRIORITY JOURNAL |
| 690 | 1 | 0 | |a RODENT |
| 690 | 1 | 0 | |a AMINO ACID SEQUENCE |
| 690 | 1 | 0 | |a ANIMALS |
| 690 | 1 | 0 | |a BASE SEQUENCE |
| 690 | 1 | 0 | |a DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC |
| 690 | 1 | 0 | |a DNA, SATELLITE |
| 690 | 1 | 0 | |a EVOLUTION, MOLECULAR |
| 690 | 1 | 0 | |a GENE AMPLIFICATION |
| 690 | 1 | 0 | |a GENE LIBRARY |
| 690 | 1 | 0 | |a MOLECULAR SEQUENCE DATA |
| 690 | 1 | 0 | |a PHYLOGENY |
| 690 | 1 | 0 | |a RODENTIA |
| 690 | 1 | 0 | |a SEQUENCE HOMOLOGY |
| 690 | 1 | 0 | |a CTENOMYS |
| 690 | 1 | 0 | |a OCTODONTIDAE |
| 690 | 1 | 0 | |a RODENTIA |
| 700 | 1 | |a Slamovits, C.H. | |
| 700 | 1 | |a Rossi, M.S. | |
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