Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in South American tuco-tucos (genus Ctenomys, Rodentia: Octodontidae): A phylogenetic approach
We investigated the relationship between satellite copy number and chromosomal evolution in tuco-tucos (genus Ctenomys), a karyotypically diverse clade of rodents. To explore phylogenetic relationships among 23 species and 5 undescribed forms, we sequenced the complete mitochondrial cytochrome b gen...
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Society for Molecular Biology and Evolution
2001
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| LEADER | 17691caa a22013577a 4500 | ||
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| 040 | |a Scopus |b spa |c AR-BaUEN |d AR-BaUEN | ||
| 030 | |a MBEVE | ||
| 100 | 1 | |a Slamovits, C.H. | |
| 245 | 1 | 0 | |a Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in South American tuco-tucos (genus Ctenomys, Rodentia: Octodontidae): A phylogenetic approach |
| 260 | |b Society for Molecular Biology and Evolution |c 2001 | ||
| 270 | 1 | 0 | |m Rossi, M.S.; Laboratorio de Fisiología, Facultad de Cie. Exactas y Nat., Departamento de Ciencias Biologicas, Ciudad Universitaria, C1428EHA Buenos Aires, Argentina; email: srossi@bg.fcen.uba.ar |
| 506 | |2 openaire |e Política editorial | ||
| 504 | |a Anderson, S., Yates, T.L., Cook, J.A., Notes on Bolivian mammals 4: The genus Ctenomys (Rodentia, Ctenomyidae) in the eastern lowlands (1987) Am. Mus. Novit., 2891, pp. 1-20 | ||
| 504 | |a Bradley, R.D., Wichman, H.A., Rapidly evolving repetitive DNAs in a conservative genome: A test of factors that affect chromosomal evolution (1994) Chromosome Res., 2, pp. 354-360 | ||
| 504 | |a Bush, G.L., Modes of animal speciation (1975) Ann. Rev. Ecol. Syst., 6, pp. 339-364 | ||
| 504 | |a Cáceres, M., Ranz, J.M., Barbadilla, A., Long, M., Ruiz, A., Generation of a widespread Drosophila inversion by a transposable element (1999) Science, 285, pp. 415-418 | ||
| 504 | |a Contreras, L.C., Torres-Mura, J.C., Spotorno, A.E., The largest known chromosome number for a mammal, in a South American desert rodent (1990) Experientia, 46, pp. 506-508 | ||
| 504 | |a Cook, J.A., (1990) Rapid chromosomal evolution and the systematics of the Bolivian tuco-tucos (Rodentia, Ctenomyidae), , Ph.D. dissertation, University of New Mexico, Albuquerque | ||
| 504 | |a Cook, J.A., Anderson, S., Yates, T.L., Notes on Bolivian mammals. 6. The genus Ctenomys (Rodentia, Ctenomyidae) in the highlands (1990) Am. Mus. Novit., 2980, pp. 1-27 | ||
| 504 | |a Cook, J.A., Lessa, E.E., Are rates of diversification in subterranean South American Tuco-Tucos (genus Ctenomys Rodentia: Octodontidae) unusually high? (1998) Evolution, 52, pp. 1521-1527 | ||
| 504 | |a Cook, J.A., Lessa, E.P., Hadly, E.A., Paleontology, phylogenetic patterns, and macroevolutionary processes in subterranean rodents (2000), pp. 332-369. , E. Lacey, J. L. Patton, and G. Cameron, eds. Life underground: The biology of subterranean rodents. University of Chicago Press, Chicago; Cook, J.A., Yates, T.L., Systematic relationships of the Tuco-tucos, genus Ctenomys (Rodentia: Octodontidae) (1994) J. Mamm., 75, pp. 583-599 | ||
| 504 | |a Cunningham, C.W., Omland, K.E., Oakley, T.H., Reconstructing ancestral character states: A critical reappraisal (1998) Trends Ecol. Evol., 13, pp. 361-366 | ||
| 504 | |a D'Elía, G., Lessa, E.P., Cook, J.A., Molecular phylogeny of tuco-tucos, genus Ctenomys (Rodentia: Octodontidae): Evaluation of the mendocinus species group and the evolution of asymmetric sperm (1999) J. Mamm. Evol., 6, pp. 9-38 | ||
| 504 | |a Dev, D.A., Tantravahi, R., Schreck, R.R., Roderick, T.H., Erlanger, B.F., Miller, O.J., Chromosome markers in Mus musculus: Differences in C-banding between the subspecies M. m. musculus and M. m. molossinus (1975) Chromosoma, 53, pp. 335-344 | ||
| 504 | |a Evgen'ev, M.B., Zelentsova, H., Poluectova, H., Lyozin, G.T., Veleikodvorskaja, V., Pyatkov, K.I., Zhivotovsky, L.A., Kidwell, M.G., Mobile elements and chromosomal evolution in the virilis group of Drosophila (2000) Proc. Natl. Acad. Sci. USA, 97, pp. 11337-11342 | ||
| 504 | |a Felsenstein, J., (1993) PHYLIP (phylogeny inference package). Version 3.5c, , Distributed by the author, Department of Genetics, University of Washington, Seattle | ||
| 504 | |a Gallardo, M., Las especies chilenas de Ctenomys (Rodentia Octodontidae). I. Estabilidad cariotípica (1979) Arch. Biol. Med. Exp., 12, pp. 71-82 | ||
| 504 | |a Karyotypic evolution in Ctenomys (Rodentia: Ctenomyidae) (1991) J. Mamm., 72, pp. 11-21 | ||
| 504 | |a Gallardo, M.H., Bickham, J.W., Honeycutt, R.L., Ojeda, R.A., Köhler, N., Discovery of tetraploidy in a mammal (1999) Nature, 401, p. 341 | ||
| 504 | |a Garagna, S., Marziliano, N., Zuccotti, M., Searle, J.B., Capanna, E., Redi, C.A., Pericentromeric organization at the fusion point of mouse Robertsonian translocation chromosomes (2001) Proc. Natl. Acad. Sci. USA, 98, pp. 171-175 | ||
| 504 | |a Garagna, S., Perez-Zapata, A., Zuccotti, M., Mascheretti, S., Marziliano, N., Redi, C.A., Aguilera, M., Capanna, E., Genome composition in Venezuelan spiny-rats of the genus Proechimys (Rodentia Echimyidae), I. Genome size, C-heterochromatin and repetitive DNAs in situ hybridization patterns (1997) Cytogenet. Cell Genet., 78, pp. 36-43 | ||
| 504 | |a Hamilton, M.J., Honeycutt, R.L., Baker, R.J., Intragenomic movement, sequence amplification and the concerted evolution in satellite DNA in harvest mice Reithrodontomys: Evidence from in situ hybridization (1990) Chromosoma, 99, pp. 321-329 | ||
| 504 | |a Hamilton, M.J., Hong, G., Wichman, H.A., Intragenomic movement and concerted evolution of satellite DNA in Peromyscus: Evidence from in situ hybridization (1992) Cytogenet. Cell Genet., 60, pp. 40-44 | ||
| 504 | |a Hatch, F.T., Bodner, A.J., Mazrimas, J.A., Moore, D.H., Satellite DNA and cytogenetic evolution DNA quantity, satellite DNA and karyotypic variations in kangaroo rats (genus Dipodomys) (1976) Chromosoma, 58, pp. 155-168 | ||
| 504 | |a Hillis, D.M., Huelsenbeck, J.P., Signal, noise and reliability in molecular phylogenetic analysis (1992) J. Hered., 83, pp. 189-195 | ||
| 504 | |a Irwin, D.M., Kocher, T.D., Wilson, A.C., Evolution of the cytochrome b gene of mammals (1991) J. Mol. Evol., 32, pp. 128-144 | ||
| 504 | |a John, B., Miklos, G.L.G., Functional aspects of satellite DNA and heterochromatin (1979) Internatl. Rev. Cytol., 58, pp. 1-114 | ||
| 504 | |a Kelt, D.A., Gallardo, M., A new species of tuco-tuco, genus Ctenomys (Rodentia: Ctenomyidae) from Patagonian Chile (1994) J. Mamm., 75, pp. 338-348 | ||
| 504 | |a King, M., (1993) Species evolution, the role of chromosomal change, , Cambridge University Press, Cambridge, England | ||
| 504 | |a Kumar, S., Tamura, K., Nei, M., (1993) MEGA: Molecular evolutionary genetic analysis. Version 1.0, , Pennsylvania State University, University Park | ||
| 504 | |a Lande, R., The fixation of chromosomal rearrangements in a subdivided population with local extinction and colonization (1985) Heredity, 54, pp. 323-332 | ||
| 504 | |a Lara, M.C., Patton, J.L., Silva, M.N., The simultaneous diversification of South American echimyid rodents (Hystricognathi) based on complete cytochrome b sequences (1996) Mol. Phylogenet. Evol., 5, pp. 403-413 | ||
| 504 | |a Lessa, E.P., Cook, J.A., The molecular phylogenetics of tuco-tucos (genus Ctenomys Rodentia: Octodontidae) suggests an early burst of speciation (1998) Mol. Phylogenet. Evol., 9, pp. 88-99 | ||
| 504 | |a Li, Y.-C., Lee, C., Sanoudou, D., Hsu, T.-H., Li, S.-Y., Lin, C.-C., Interstitial colocalization of two cervid satellite DNAs involved in the genesis of the Indian muntjac karyotype (2000) Chromosome Res., 8, pp. 363-373 | ||
| 504 | |a Maddison, W.P., Maddison, D.R., (1992) MacClade. Version 3.0., , Sinauer, Sunderland, Mass | ||
| 504 | |a Mascheretti, S., Mirol, P., Giménez, M.D., Bidau, C., Contreras, J.R., Searle, J.B., Phylogenetics of the speciose and chromosomally variable rodent genus Ctenomys (Ctenomyidae Octodontidae), based on mitochondrial cytochrome b sequences (2000) Biol. J. Linn. Soc., 70, pp. 361-376 | ||
| 504 | |a Massarini, A.I., Barros, M.A., Ortells, M.O., Reig, O.A., Chromosomal polymorphism and small karyotypic differentiation in a group of Ctenomys species from Central Argentina (Rodentia Octodontidae) (1991) Genetica, 83, pp. 131-144 | ||
| 504 | |a Modi, W.S., Comparative analyses of heterochromatin in Microtus: Sequence heterogeneity and localized expansion and contraction of satellite DNA arrays (1993) Cytogenet. Cell Genet., 62, pp. 142-148 | ||
| 504 | |a Nevo, E., (1999) Mosaic evolution of subterranean mammals, , Oxford University Press, Oxford, England | ||
| 504 | |a Novello, A.F., Lessa, E.P., G-band homology in two karyomorphs of the Ctenomys pearsoni complex (Rodentia Octodontidae) of Neotropical fossorial rodents (1986) Z. Säugetierk, 51, pp. 378-380 | ||
| 504 | |a Ortells, M.O., Phylogenetic analysis of G-banded karyotypes among the South American subterranean rodents of the genus Ctenomys (Caviomorpha: Octodontidae), with special reference to chromosomal evolution and speciation (1995) Biol. J. Linn. Soc., 54, pp. 43-70 | ||
| 504 | |a Ortells, M.O., Barrantes, G.E., A study of genetic distances and variability in several species of the genus Ctenomys (Rodentia: Octodontidae) with special reference to a probable causal role of chromosomes in speciation (1994) Biol. J. Linn. Soc., 53, pp. 189-208 | ||
| 504 | |a Ortells, M.O., Contreras, J.R., Reig, O.A., New Ctenomys karyotypes (Rodentia Octodontidae) from northeastern Argentina and from Paraguay confirm the extreme chromosomal multiformity of the genus (1990) Genetica, 82, pp. 189-201 | ||
| 504 | |a Osgood, W.H., A new octodont rodent from the Paraguayan Chaco (1946) Fieldiana Zool., 31, pp. 47-49 | ||
| 504 | |a Patton, J.L., Sherwood, S.W., Genome evolution in pocket gophers (genus Thomomys) I. Heterochromatin variation and speciation potential (1982) Chromosoma, 85, pp. 149-162 | ||
| 504 | |a Pesce, C.G., Rossi, M.S., Muro, A.E., Reig, O.A., Zorzópulos, J., Kornblihtt, A.R., Binding of nuclear factors to a satellite DNA of retroviral origin with marked differences in copy number among species of the rodent Ctenomys (1994) Nucleic Acids Res., 22, pp. 656-661 | ||
| 504 | |a Reig, O.A., Karyotypic repatterning as a triggering factor in cases of explosive speciation (1989), pp. 246-289. , A. Fontdevila, ed. Evolutionary biology of unstable populations. Springer Verlag, Berlin; Reig, O.A., Busch, C., Ortells, M.O., Contreras, J.R., An overview of evolution, systematics, population biology, cytogenetics, molecular biology and speciation in Ctenomys (1990), pp. 97-128. , E. Nevo and O. A. Reig, eds. Evolution of subterranean mammals at the organismal and molecular levels. Wiley-Liss, New York; Reig, O.A., Kiblisky, P., Chromosome multiformity in the genus Ctenomys (Rodentia Octodontidae), a progress report (1969) Chromosoma, 28, pp. 211-244 | ||
| 504 | |a Reig, O.A., Massarini, A.L., Ortells, M.O., Barros, M.A., Tiranti, S.I., Dyzenchauz, E.J., New karyotypes and C-banding patterns of the subterranean rodents of the genus Ctenomys (Caviomorpha Octodontidae) from Argentina (1992) Mammalia, 56, pp. 603-623 | ||
| 504 | |a Rice, N.R., Strauss, N.A., Relatedness of mouse satellite deoxyribonucleic acid to deoxyribonucleic acid of various Mus species (1973) Proc. Natl. Acad. Sci. USA, 70, pp. 3546-3550 | ||
| 504 | |a Rossi, M.S., Pesce, C.G., Kornblihtt, A.R., Zorzópulos, J., Origin and evolution of a major satellite DNA from South American rodents of the genus Ctenomys (1995) Rev. Chil. Hist. Nat., 68, pp. 171-183 | ||
| 504 | |a Rossi, M.S., Pesce, C.G., Reig, O.A., Kornblihtt, A.R., Zorzópulos, J., Retroviral-like features in the repetitive unit of the major satellite DNA from the South American rodents of the genus Ctenomys (1993) DNA Seq., 3, pp. 379-381 | ||
| 504 | |a Rossi, M.S., Redi, C.A., Viale, G., Massarini, A.L., Capanna, E., Chromosomal distribution of the major satellite DNA of South American rodents of the genus Ctenomys (1995) Cytogenet. Cell Genet., 69, pp. 179-184 | ||
| 504 | |a Rossi, M.S., Reig, O.A., Zorzópulos, J., Evidence for rolling-circle replication in a major satellite DNA from the South American rodents of the genus Ctenomys (1990) Mol. Biol. Evol., 7, pp. 340-350 | ||
| 504 | |a A major satellite DNA from the South American rodents of the genus Ctenomys (1993) Z. Säugetierk., 58, pp. 244-251 | ||
| 504 | |a Schluter, D., Uncertainty in ancient phylogenies (1995) Nature, 377, pp. 108-109 | ||
| 504 | |a Schluter, D., Price, T., Mooers, A., Ludwig, D., Likelihood of ancestor states in adaptive radiation (1997) Evolution, 51, pp. 1699-1711 | ||
| 504 | |a Steinberg, E.K., Patton, J., Genetic structure and the geographic of speciation in subterranean rodents; opportunities and constrains for evolutionary diversification (2000), pp. 301-331. , E. Lacey, J. L. Patton, and G. Cameron, eds. Life underground: The biology of subterranean rodents. University of Chicago Press, Chicago; Sullivan, J., Markert, J.A., Kilpatrick, C.W., Phylogeography and molecular systematics of the Peromyscus aztecus species group (Rodentia Muridae) inferred using parsimony and likelihood (1997) Syst. Biol., 46, pp. 426-440 | ||
| 504 | |a Swofford, D.L., (1998) PAUP. Phylogenetic analysis using parsimony. Version 4.0 beta, , Sinauer, Sunderland, Mass | ||
| 504 | |a Vitullo, A.D., Cook, J.A., The role of sperm morphology in the evolution of tuco-tucos (Rodentia: Ctenomyidae): Confirmation of results from Bolivian species (1991) Z. Säugetierk, 56, pp. 359-364 | ||
| 504 | |a Wang, W., Lan, H., Rapid and parallel chromosomal number reductions in muntjac deer inferred from mitochondrial DNA phylogeny (2000) Mol. Biol. Evol., 17, pp. 1326-1333 | ||
| 504 | |a White, M.J.D., (1978) Modes of speciation, , Freeman, San Francisco | ||
| 504 | |a Wichman, H.A., Payne, C.T., Ryder, O.A., Hamilton, M.J., Maltbie, M., Baker, R.J., Genomic distribution of heterochromatic sequences in equids: Implications to rapid chromosomal evolution (1991) J. Hered., 82, pp. 369-377 | ||
| 504 | |a Yang, F., O'Brien, P.C.M., Weinberg, J., Neitzel, H., Lin, C.C., Ferguson-Smith, M.A., Chromosomal evolution of the Chinese muntjac (Muntiacus reevesi) (1997) Chromosoma, 106, pp. 37-43 | ||
| 504 | |a Yunis, J.J., Yasmineh, W.G., Heterochromatin, satellite DNA, and cell function (1971) Science, 174, pp. 1200-1209 | ||
| 520 | 3 | |a We investigated the relationship between satellite copy number and chromosomal evolution in tuco-tucos (genus Ctenomys), a karyotypically diverse clade of rodents. To explore phylogenetic relationships among 23 species and 5 undescribed forms, we sequenced the complete mitochondrial cytochrome b genes of 27 specimens and incorporated 27 previously published sequences. We then used quantitative dot-blot techniques to assess changes in the copy number of the major Ctenomys satellite DNA (satDNA), named RPCS. Our analysis of the relationship between variation in copy number of RPCS and chromosomal changes employed a maximum-likelihood approach to infer the copy number of the satellite RPCS in the ancestors of each clade. We found that amplifications and deletions of RPCS were associated with extensive chromosomal rearrangements even among closely related species. In contrast, RPCS copy number stability was observed within clades characterized by chromosomal stability. This example reinforces the suspected role of amplification, deletion, and intragenomic movement of satDNA in promoting extensive chromosomal evolution. |l eng | |
| 593 | |a Laboratorio de Fisiología, Facultad de Cie. Exactas y Nat., Departamento de Ciencias Biologicas, Ciudad Universitaria, C1428EHA Buenos Aires, Argentina | ||
| 690 | 1 | 0 | |a CHROMOSOMAL EVOLUTION |
| 690 | 1 | 0 | |a CYTOCHROME B |
| 690 | 1 | 0 | |a PHYLOGENETICS |
| 690 | 1 | 0 | |a SATELLITE DNA |
| 690 | 1 | 0 | |a SATELLITE DNA |
| 690 | 1 | 0 | |a ARTICLE |
| 690 | 1 | 0 | |a CHROMOSOME |
| 690 | 1 | 0 | |a CHROMOSOME REARRANGEMENT |
| 690 | 1 | 0 | |a DOT HYBRIDIZATION |
| 690 | 1 | 0 | |a GENE AMPLIFICATION |
| 690 | 1 | 0 | |a GENE DELETION |
| 690 | 1 | 0 | |a GENE SEQUENCE |
| 690 | 1 | 0 | |a GENETIC STABILITY |
| 690 | 1 | 0 | |a KARYOTYPE |
| 690 | 1 | 0 | |a MOLECULAR EVOLUTION |
| 690 | 1 | 0 | |a NONHUMAN |
| 690 | 1 | 0 | |a NUCLEOTIDE SEQUENCE |
| 690 | 1 | 0 | |a PHYLOGENY |
| 690 | 1 | 0 | |a RODENT |
| 690 | 1 | 0 | |a SEQUENCE ANALYSIS |
| 690 | 1 | 0 | |a SPECIES DIFFERENTIATION |
| 690 | 1 | 0 | |a UNINDEXED SEQUENCE |
| 690 | 1 | 0 | |a CTENOMYS |
| 700 | 1 | |a Cook, J.A. | |
| 700 | 1 | |a Lessa, E.P. | |
| 700 | 1 | |a Rossi, M.S. | |
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