Complete genome sequences of Lactobacillus phages J-1 and PL-1
Lactobacillus phages J-1 and PL-1 were isolated during the 1960s from abnormal fermentations of Yakult. The genomes are almost identical, but PL-1 has a deletion in the genetic switch region and also differs in a gene coding for a putative tail protein. © 2014 Dieterle et al.
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American Society for Microbiology
2014
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| Acceso en línea: | Registro en Scopus DOI Handle Registro en la Biblioteca Digital |
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| LEADER | 06423caa a22005537a 4500 | ||
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| 008 | 190411s2014 xx ||||fo|||| 00| 0 eng|d | ||
| 024 | 7 | |2 scopus |a 2-s2.0-84998865500 | |
| 040 | |a Scopus |b spa |c AR-BaUEN |d AR-BaUEN | ||
| 100 | 1 | |a Dieterle, M.E. | |
| 245 | 1 | 0 | |a Complete genome sequences of Lactobacillus phages J-1 and PL-1 |
| 260 | |b American Society for Microbiology |c 2014 | ||
| 270 | 1 | 0 | |m Piuri, M.; Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IQUIBICEN-CONICETArgentina; email: mpiuri@qb.fcen.uba.ar |
| 506 | |2 openaire |e Política editorial | ||
| 504 | |a Hino, M., Ikebe, N., Studies on the lactic acid bacteria employed for beverage production. II. Isolation and some properties of a bacteriophage infected during the fermentation of lactic acid beverage (1965) J. Agric. Chem. Soc. Jpn, 39, pp. 472-476 | ||
| 504 | |a Watanabe, K., Takesue, S., Jin-Nai, K., Yoshikawa, T., Bacteriophage active against the lactic acid beverage-producing bacterium Lactobacillus casei (1970) Appl. Microbiol, 20, pp. 409-415 | ||
| 504 | |a Kakita, Y., Kashige, N., Murata, K., Kuroiwa, A., Funatsu, M., Watanabe, K., Inactivation of Lactobacillus bacteriophage PL-1 by microwave irradiation (1995) Microbiol. Immunol, 39, pp. 571-576. , http://dx.doi.org/10.1111/j.1348-0421.1995.tb02244.x | ||
| 504 | |a Kashige, N., Kakita, Y., Nakashima, Y., Miake, F., Watanabe, K., Mechanism of the photocatalytic inactivation of Lactobacillus casei phage PL-1 by Titania thin film (2001) Curr. Microbiol, 42, pp. 184-189. , http://dx.doi.org/10.1007/s002840010201 | ||
| 504 | |a Kashige, N., Nakashima, Y., Miake, F., Watanabe, K., Cloning, sequence analysis, and expression of Lactobacillus casei phage PL-1 lysis genes (2000) Arch. Virol, 145, pp. 1521-1534. , http://dx.doi.org/10.1007/s007050070073 | ||
| 504 | |a Capra, M.L., Quiberoni, A., Reinheimer, J., Phages of Lactobacillus casei/paracasei: response to environmental factors and interaction with collection and commercial strains (2006) J. Appl. Microbiol, 100, pp. 334-342. , http://dx.doi.org/10.1111/j.1365-2672.2005.02767.x | ||
| 504 | |a Nakashima, Y., Ikeda, H., Kakita, Y., Miake, F., Watanabe, K., Restriction map of the genomic DNA of Lactobacillus casei bacteriophage PL-1 and nucleotide sequence of its cohesive single-stranded ends (1994) J. Gen. Virol, 75, pp. 2537-2541. , http://dx.doi.org/10.1099/0022-1317-75-9-2537 | ||
| 504 | |a Sechaud, L., Cluzel, P.J., Rousseau, M., Baumgartner, A., Accolas, J.P., Bacteriophages of Lactobacilli (1988) Biochimie, 70, pp. 401-410. , http://dx.doi.org/10.1016/0300-9084(88)90214-3 | ||
| 504 | |a Watanabe, K., Kakita, Y., Nakashima, Y., Sasaki, T., Protoplast transfection of Lactobacillus casei by phage PL-1 DNA (1990) Agric. Biol. Chem, 54, pp. 937-941. , http://dx.doi.org/10.1271/bbb1961.54.937 | ||
| 504 | |a Watanabe, K., Ishibashi, K., Nakashima, Y., Sakurai, T., A phageresistant mutant of Lactobacillus casei which permits phage adsorption but not genome injection (1984) J. Gen. Virol, 65, pp. 981-986. , http://dx.doi.org/10.1099/0022-1317-65-5-981 | ||
| 504 | |a Stein, L.D., Mungall, C., Shu, S., Caudy, M., Mangone, M., Day, A., Nickerson, E., Lewis, S., The generic genome browser: a building block for a model organism system database (2002) Genome Res, 12, pp. 1599-1610. , http://dx.doi.org/10.1101/gr.403602 | ||
| 504 | |a Delcher, A.L., Harmon, D., Kasif, S., White, O., Salzberg, S.L., Improved microbial gene identification with Glimmer (1999) Nucleic Acids Res, 27, pp. 4636-4641. , http://dx.doi.org/10.1093/nar/27.23.4636 | ||
| 504 | |a Borodovsky, M., McIninch, J., Recognition of genes in DNA sequence with ambiguities (1993) Biosystems, 30, pp. 161-171. , http://dx.doi.org/10.1016/0303-2647(93)90068-N | ||
| 504 | |a Lowe, T.M., Eddy, S.R., tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence (1997) Nucleic Acids Res, 25, pp. 955-964. , http://dx.doi.org/10.1093/nar/25.5.0955 | ||
| 504 | |a Laslett, D., Canback, B., ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences (2004) Nucleic Acids Res, 32, pp. 11-16. , http://dx.doi.org/10.1093/nar/gkh152 | ||
| 504 | |a Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., Basic Local Alignment Search Tool (1990) J. Mol. Biol, 215, pp. 403-410. , http://dx.doi.org/10.1016/S0022-2836(05)80360-2 | ||
| 504 | |a Marchler-Bauer, A., Bryant, S.H., CD-Search: protein domain annotations on the fly (2004) Nucleic Acids Res, 32 (WEB SERVER ISSUE), pp. W327-W331. , http://dx.doi.org/10.1093/nar/gkh454 | ||
| 504 | |a Söding, J., Biegert, A., Lupas, A.N., The HHpred interactive server for protein homology detection and structure prediction (2005) Nucleic Acids Res, 33, pp. W244-W248. , http://dx.doi.org/10.1093/nar/gki408 | ||
| 520 | 3 | |a Lactobacillus phages J-1 and PL-1 were isolated during the 1960s from abnormal fermentations of Yakult. The genomes are almost identical, but PL-1 has a deletion in the genetic switch region and also differs in a gene coding for a putative tail protein. © 2014 Dieterle et al. |l eng | |
| 593 | |a Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IQUIBICEN-CONICET, Buenos Aires, Argentina | ||
| 593 | |a Department of Biological Sciences and Pittsburgh Bacteriophage Institute, University of Pittsburgh, Pittsburgh, PA, United States | ||
| 700 | 1 | |a Jacobs-Sera, D. | |
| 700 | 1 | |a Russell, D. | |
| 700 | 1 | |a Hatfull, G. | |
| 700 | 1 | |a Piuri, M. | |
| 773 | 0 | |d American Society for Microbiology, 2014 |g v. 2 |k n. 1 |p Genome Announce. |x 21698287 |t Genome Announcements | |
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| 856 | 4 | 0 | |u https://doi.org/10.1128/genomeA.e00998-13 |y DOI |
| 856 | 4 | 0 | |u https://hdl.handle.net/20.500.12110/paper_21698287_v2_n1_p_Dieterle |y Handle |
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