Overcoming problems with the use of ratios as continuous characters for phylogenetic analyses
The use of quantitative morphometric information for phylogenetic inference has been an intensely debated topic for most of the history of phylogenetic systematics. Despite several drawbacks, the most common strategy to include this sort of data into phylogenetic studies is the use of ratios, that i...
Guardado en:
| Autor principal: | |
|---|---|
| Otros Autores: | , |
| Formato: | Capítulo de libro |
| Lenguaje: | Inglés |
| Publicado: |
Blackwell Publishing Ltd
2015
|
| Acceso en línea: | Registro en Scopus DOI Handle Registro en la Biblioteca Digital |
| Aporte de: | Registro referencial: Solicitar el recurso aquí |
| LEADER | 14661caa a22010817a 4500 | ||
|---|---|---|---|
| 001 | PAPER-13667 | ||
| 003 | AR-BaUEN | ||
| 005 | 20230518204404.0 | ||
| 008 | 190411s2015 xx ||||fo|||| 00| 0 eng|d | ||
| 024 | 7 | |2 scopus |a 2-s2.0-84938950275 | |
| 040 | |a Scopus |b spa |c AR-BaUEN |d AR-BaUEN | ||
| 030 | |a ZLSCA | ||
| 100 | 1 | |a Mongiardino Koch, N. | |
| 245 | 1 | 0 | |a Overcoming problems with the use of ratios as continuous characters for phylogenetic analyses |
| 260 | |b Blackwell Publishing Ltd |c 2015 | ||
| 270 | 1 | 0 | |m Mongiardino Koch, N.Intendente Guiraldes 2160,Ciudad Universitaria (C1428 EHA), Argentina |
| 506 | |2 openaire |e Política editorial | ||
| 504 | |a Adams, D.C., Cardini, A., Monteiro, L.R., O'Higgins, P., Rohlf, F.J., Morphometrics and phylogenetics: principal components of shape from cranial modules are neither appropriate nor effective cladistic characters (2011) Journal of Human Evolution, 60, pp. 240-243 | ||
| 504 | |a Adams, D.C., Rohlf, F.J., Slice, D.E., Geometric morphometrics: ten years of progress following the 'revolution' (2004) Italian Journal of Zoology, 71, pp. 5-16 | ||
| 504 | |a Adams, D.C., Rohlf, F.J., Slice, D.E., A field comes of age: geometric morphometrics in the 21st century (2013) Hystrix, the Italian Journal of Mammalogy, 24, pp. 7-14 | ||
| 504 | |a Atchley, W.R., Gaskins, C.T., Anderson, D., Statistical properties of ratios. I. Empirical results (1976) Systematic Zoology, 25, pp. 137-148 | ||
| 504 | |a Albrecht, G.H., Gelvin, B.R., Hartman, S.E., Ratios as a size adjustment in morphometrics (1993) American Journal of Physical Anthropology, 91, pp. 441-468 | ||
| 504 | |a Bardin, J., Rouget, I., Yacobucci, M., Cecca, F., Increasing the number of discrete character states for continuous characters generates well-resolved trees that do not reflect phylogeny (2014) Integrative Zoology, 9, pp. 531-541 | ||
| 504 | |a Baur, H., Leuenberger, C., Analysis of ratios in multivariate morphometry (2011) Systematic Biology, 60, pp. 813-825 | ||
| 504 | |a Bert, D., Bersac, S., Evolutionary patterns - tested with cladistics - and processes in relation to palaeoenvironments of the Upper Barremian genus Gassendiceras (Ammonitina, Lower Cretaceous) (2013) Paleontology, 56, pp. 631-646 | ||
| 504 | |a Carrasco, P.A., Mattoni, C.I., Leynaud, G.C., Scrocchi, G.J., Morphology, phylogeny and taxonomy of South American bothropoid pitvipers (Serpentes, Viperidae) (2012) Zoologica Scripta, 2, pp. 109-124 | ||
| 504 | |a Castañeda, M.D.R., de Queiroz, K., Phylogeny of the Dactyloa clade of Anolis lizards: new insights from combining morphological and molecular data (2013) Bulletin of the Museum of Comparative Zoology, 160, pp. 345-398 | ||
| 504 | |a Catalano, S., Ercoli, M.D., Prevosti, F.J., The more, the better: the use of multiple landmark configurations to solve the phylogenetic relationships of musteloids (2015) Systematic Biology, 64, pp. 294-306 | ||
| 504 | |a Catalano, S., Goloboff, P.A., Giannini, N.P., Phylogenetic morphometrics (I): the use of landmark data in a phylogenetic framework (2010) Cladistics, 26, pp. 539-549 | ||
| 504 | |a Clouse, M.C., de Bivort, B.L., Giribet, G., A phylogenetic analysis for the South-east Asian mite harvestman family Stylocellidae (Opiliones: Cyphophthalmi) - a combined analysis using morphometric and molecular data (2010) Invertebrate Systematics, 23, pp. 515-529 | ||
| 504 | |a Clouse, R.M., de Bivort, B.L., Giribet, G., Phylogenetic signal in morphometric data (2011) Cladistics, 27, pp. 337-340 | ||
| 504 | |a Corruccini, R.S., Correlation properties of morphometric ratios (1977) Systematic Zoology, 26, pp. 211-214 | ||
| 504 | |a Coyle, F.A., A revision of the funnel web mygalomorph spider subfamily Ischnothelinae (Araneae, Dipluridae) (1995) Bulletin of the American Museum of Natural History, 226, pp. 1-133 | ||
| 504 | |a de Bivort, B.L., Clouse, R.M., Giribet, G., A morphometrics-based phylogeny of the temperate Gondwanan mite harvestmen (Opiliones, Cyphophthalmi, Pettalidae) (2010) Journal of Zoological Systematics and Evolutionary Research, 48, pp. 294-309 | ||
| 504 | |a De Gennaro, D., Scataglini, M.A., Análisis filogenético del género Sacciolepis (Poaceae, Panicoideae, Paniceae) con caracteres morfológicos (2012) Darwiniana, 50, pp. 81-96 | ||
| 504 | |a Doyle, J.J., Trees within trees: genes and species, molecules and morphology (1997) Systematic Biology, 46, pp. 537-553 | ||
| 504 | |a Farris, J., Methods for computing Wagner trees (1970) Systematic Zoology, 19, pp. 83-92 | ||
| 504 | |a Frampton, C.M., Ward, J.M., The use of ratio variables in systematics (1990) Taxon, 39, pp. 586-592 | ||
| 504 | |a Giribet, G., Morphology should not be forgotten in the era of genomics-a phylogenetic perspective (2015) Zoologischer Anzeiger | ||
| 504 | |a Goloboff, P.A., Estimating character weights during tree search (1993) Cladistics, 9, pp. 83-91 | ||
| 504 | |a Goloboff, P.A., Calculating SPR distances between trees (2007) Cladistics, 23, pp. 1-7 | ||
| 504 | |a Goloboff, P.A., Farris, J.S., Källersjö, M., Oxelman, B., Ramírez, M.J., Szumik, C.A., Improvements to resampling measures of group support (2003) Cladistics, 19, pp. 324-332 | ||
| 504 | |a Goloboff, P.A., Farris, J.S., Nixon, K.C., TNT, a free program for phylogenetic analysis (2008) Cladistics, 24, pp. 774-786 | ||
| 504 | |a Goloboff, P.A., Mattoni, C.I., Quinteros, A.S., Continuous characters analyzed as such (2006) Cladistics, 22, pp. 589-601 | ||
| 504 | |a González-José, R., Escapa, I., Neves, W.A., Cúneo, R., Pucciarelli, H.M., Cladistic analysis of continuous modularized traits provides phylogenetic signals in Homo evolution (2008) Nature, 453, pp. 775-778 | ||
| 504 | |a Hills, M., On ratios - A response to Atchley, Gaskins and Anderson (1978) Systematic Zoology, 27, pp. 61-62 | ||
| 504 | |a Hornung-Leoni, C.T., Sosa, V., Morphological phylogenetics of Puya subgenus Puya (Bromeliaceae) (2008) Botanical Journal of the Linnean Society, 156, pp. 93-110 | ||
| 504 | |a Hormiga, G., Scharff, N., Coddington, J.A., The phylogenetic basis of sexual size dimorphism in orb-weaving spiders (Araneae, Orbiculariae) (2000) Systematic Biology, 49, pp. 435-462 | ||
| 504 | |a Jensen, R.J., The conundrum of morphometrics (2003) Taxon, 52, pp. 663-671 | ||
| 504 | |a Kammerer, C.F., Fröbisch, J., Angielczyk, K.D., On the validity and phylogenetic position of Eubrachiosaurus browni, a kannemeyeriiform dicynodont (Anomodontia) from Triassic North America (2013) PLoS ONE, 8, p. e64203 | ||
| 504 | |a Lehtonen, S., Systematics of the Alismataceae - A morphological evaluation (2009) Aquatic Botany, 91, pp. 279-290 | ||
| 504 | |a Leirmann, M., Steel, A., Rosing, M., Guttorp, P., Random denominators and the analysis of ratio data (2004) Environmental and Ecological Statistics, 11, pp. 55-71 | ||
| 504 | |a Lopardo, L., Giribet, G., Hormiga, G., Mophology to the rescue: molecular data and the signal of morphological characters in combined phylogenetic analyses - a case study from mysmenid spiders (Araneae, Mysmenidae), with comments on the evolution of web architecture (2011) Cladistics, 27, pp. 278-330 | ||
| 504 | |a MacLeod, N., Landmarks, localization, and the use of morphometrics in phylogenetic analysis (2001) Fossils, Phylogeny, and Form: An Analytical Approach, pp. 197-234. , In G. Edgecombe, J. Adrain & B. Lieberman (Eds) New York: Plenum | ||
| 504 | |a MacLeod, N., Phylogenetic signals in morphometric data (2002) Morphology, Shape and Phylogeny, pp. 45-52. , In N. MacLeod & P. L. Forey (Eds) London: Taylor & Francis | ||
| 504 | |a MacLeod, N., Forey, P.L., Introduction: morphology, shape & phylogeny (2002) Morphology, Shape and Phylogeny, pp. 45-52. , In N. MacLeod & P. L. Forey (Eds) London: Taylor & Francis | ||
| 504 | |a Maddison, W.P., Missing data versus missing characters in phylogenetic analysis (1993) Systematic Biology, 42, pp. 576-581 | ||
| 504 | |a Mannion, P.D., Upchurch, P., Barnes, R.N., Mateus, O., Osteology of the late Jurassic Portuguese sauropod dinosaur Lusotitan atalaiensis (Macronaria) and the evolutionary history of basal titanosauriforms (2013) Zoological Journal of the Linnean Society, 168, pp. 98-206 | ||
| 504 | |a Marks, C.E., Newbigin, E., Ladiges, P.Y., Comparative morphology and phylogeny of Nicatiana section Suaveolentes (Solanaceae) in Australia and the South Pacific (2011) Australian Systematic Botany, 24, pp. 61-86 | ||
| 504 | |a Mickevich, M.F., Farris, J.S., The implications of congruence in Menidia (1981) Systematic Zoology, 30, pp. 351-370 | ||
| 504 | |a Mongiardino Koch, N., Soto, I.M., Ramírez, M.J., First phylogenetic analysis of the family Neriidae (Diptera), with a study on the issue of scaling continuous characters (2015) Cladistics, 31, pp. 142-165 | ||
| 504 | |a Monteiro, L.R., Why morphometrics is special: the problem with using partial warps as characters for phylogenetic inference (2000) Systematic Biology, 49, pp. 796-800 | ||
| 504 | |a Naylor, G.J.P., Can partial warp scores be used as cladistic characters? (1996) Advances in Morphometrics, pp. 519-530. , In L. F. Marcus (Ed) New York: Plenum Press | ||
| 504 | |a Pereyra, V., Mound, L.A., Phylogenetic relationships within the genus Cranothrips (Thysanoptera, Melanthripidae) with consideration of host associations and disjunct distributions within the family (2009) Systematic Entomology, 34, pp. 151-161 | ||
| 504 | |a Pereyra, V., Mound, L.A., Phylogenetic relationships within the genus Desmothrips (Thysanoptera, Aeolothripidae), an Australian genus of facultative flower-living predators (2010) Systematic Entomology, 35, pp. 306-317 | ||
| 504 | |a Pleijel, F., On character coding for phylogeny reconstruction (1995) Cladistics, 11, pp. 309-315 | ||
| 504 | |a Rae, T.C., The logical basis for the use of continuous characters in phylogenetic systematics (1998) Cladistics, 14, pp. 221-228 | ||
| 504 | |a Rae, T.C., Scaling, polymorphism and cladistic analysis (2002) Morphology, Shape and Phylogeny, pp. 45-52. , In N. MacLeod & P. L. Forey (Eds) London: Taylor & Francis | ||
| 504 | |a Rae, T.C., Buckley, A., (2014), TaxMan: An online facility for the coding of continuous characters for cladistic analysis. arXiv preprint arXiv: 1411.4550; Reyment, R.A., Blacklith, R.E., Campbell, N.A., (1984) Multivariate Morphometries, , 2nd edn. New York: Academic | ||
| 504 | |a Robinson, D., Foulds, L., Comparison of phylogenetic trees (1981) Mathematical Biosciences, 53, pp. 131-147 | ||
| 504 | |a Rohlf, F.J., On applications of geometric morphometrics to studies of ontogeny and phylogeny (1998) Systematic Biology, 47, pp. 147-158 | ||
| 504 | |a Rohlf, F.J., Marcus, L.F., A revolution in morphometrics (1993) Trends in Ecology & Evolution, 8, pp. 129-132 | ||
| 504 | |a Schuh, R.T., (2000) Biological Systematics: Principles and Applications, , New York: Cornell University Press | ||
| 504 | |a Smith, U.E., Hendricks, J.R., Geometric morphometric character suites as phylogenetic data: extracting phylogenetic signal from gastropod shells (2013) Systematic Biology, 62, pp. 366-385 | ||
| 504 | |a Thiele, K., Ladiges, P.Y., A cladistic analysis of Angophora Cav (Myrtaceae) (1988) Cladistics, 4, pp. 23-42 | ||
| 504 | |a Vargas, S., Breedy, O., Guzman, H.M., The phylogeny of Pacifigorgia (Coelenterata, Octocorallia, Gorgoniidae): a case study of the use of continuous characters in the systematics of the Octocorallia (2010) Zoosystema, 32, pp. 5-18 | ||
| 504 | |a Wheeler, W.C., Ramírez, M.J., Aagesen, L., Schulmeister, S., Partition-free congruence analysis: implications for sensitivity analysis (2006) Cladistics, 22, pp. 256-263 | ||
| 504 | |a Wiens, J.J., Character analysis in morphological phylogenetics: problems and solutions (2001) Systematic Biology, 50, pp. 689-699 | ||
| 504 | |a Winston, J.E., (1999) Describing Species: Practical Taxonomic Procedure for Biologists, , New York: Columbia University Press | ||
| 520 | 3 | |a The use of quantitative morphometric information for phylogenetic inference has been an intensely debated topic for most of the history of phylogenetic systematics. Despite several drawbacks, the most common strategy to include this sort of data into phylogenetic studies is the use of ratios, that is quotients between morphometric variables. Here, we discuss one particular problem associated with such methodology: the fact that the often arbitrary election of which variable serves as numerator and which as denominator affects the phylogenetic outcome of the analysis. We describe the cause for such an effect, and study its implications with the use of several published data matrices. Alternative coding schemes for ratio characters result in very different phylogenetic hypotheses, an effect that may even be strong enough to affect studies that combine continuous and discrete morphological information. Some of the resulting incongruence is produced by the differences in magnitude of the continuous characters involved, although different rescaling techniques are shown to decrease, but not eliminate, the confounding effect. To eliminate such problematic effect, ratios should be either log-transformed before their use or replaced by more effective ways to capture morphometric information. © 2015 Royal Swedish Academy of Sciences. |l eng | |
| 593 | |a Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina | ||
| 593 | |a Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA - CONICET/UBA), Intendente Guiraldes 2160,Ciudad Universitaria (C1428 EHA), Capital Federal, Buenos Aires, Argentina | ||
| 593 | |a Museo Argentino de Ciencias Naturales - CONICET, Ángel Gallardo 490 (C1405 DJR), Capital Federal, Buenos Aires, Argentina | ||
| 700 | 1 | |a Soto, I.M. | |
| 700 | 1 | |a Ramírez, M.J. | |
| 773 | 0 | |d Blackwell Publishing Ltd, 2015 |g v. 44 |h pp. 463-474 |k n. 5 |p Zool. Scr. |x 03003256 |t Zoologica Scripta | |
| 856 | 4 | 1 | |u https://www.scopus.com/inward/record.uri?eid=2-s2.0-84938950275&doi=10.1111%2fzsc.12120&partnerID=40&md5=f06f2e465b3333ea14edfa84ee437041 |y Registro en Scopus |
| 856 | 4 | 0 | |u https://doi.org/10.1111/zsc.12120 |y DOI |
| 856 | 4 | 0 | |u https://hdl.handle.net/20.500.12110/paper_03003256_v44_n5_p463_MongiardinoKoch |y Handle |
| 856 | 4 | 0 | |u https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_03003256_v44_n5_p463_MongiardinoKoch |y Registro en la Biblioteca Digital |
| 961 | |a paper_03003256_v44_n5_p463_MongiardinoKoch |b paper |c PE | ||
| 962 | |a info:eu-repo/semantics/article |a info:ar-repo/semantics/artículo |b info:eu-repo/semantics/publishedVersion | ||
| 999 | |c 74620 | ||