OSWALD: OpenCL Smith–Waterman on Altera’s FPGA for Large Protein Databases

The well-known Smith–Waterman algorithm is a high-sensitivity method for local sequence alignment. Unfortunately, the Smith–Waterman algorithm has quadratic time complexity, which makes it computationally demanding for large protein databases. In this paper, we present OSWALD, a portable, fully func...

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Detalles Bibliográficos
Autores principales: Rucci, Enzo, García Sénchez, Carlos, Botella Juan, Guillermo, De Giusti, Armando Eduardo, Naiouf, Marcelo, Prieto-Matias, Manuel
Formato: Articulo
Lenguaje:Inglés
Publicado: 2016
Materias:
Ciencias Informáticas
Bioinformatics
Smith-Waterman
FPGA
Altera
OpenCL
Acceso en línea:http://sedici.unlp.edu.ar/handle/10915/82889
Aporte de:
SEDICI (UNLP) de Universidad Nacional de La Plata

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